RNA id: XM_034309254.1


Basic Information

Item Value
RNA id XM_034309254.1
length 2742
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC113536986
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 83710 ~ 105920 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAACTAGTCGTTACCCACGTGATctgaaaagtgaaagtgaacGTGACTCGTTCTGCAGTTATTCGCAGACATGGAGACTGCTGTAACGAGGTGCTTTTATCTGTTCCTGTCGGTGGTCATCTGTAACGAATACTTCTTCTGGTGATTGTTTTGACTATTTGTAATAAATGACAGTCACAAAAGAAACAGGTTTAAAAGACCTGAGAAGAGGTAACAGAAGACAGCATCGTATCTTCTGCCACAGCAGGGGAAGCATGTTCGTAGATGTTCTGAAGaaatgcagAAGAACCTGTGAAGAAGAAACTGAGGAAGGCTTTCTATCTTCTGTAGAAACCTCTTCAGGAGTGTTCTAAaggataaagttttttttattatattattaaaaatgattataattattagcattttttttctttgaaccCATCAATACATTGTAATTCTCCAAAATGTGGACatattatttttgattatttttgtaaacaaattcTAGCCATAAATtcaattaacaaataaaatacctTAACAGGAGCATTTGTGTCCATTTTTCCCAGTGCTGTTTCCTGAGGTGATGATGGGACTGAAGAGAGCTTAATAATCATCTGAAGAGAGAGATAATCTTGGATTCTTTTACATACATCATTTTCTATTCAGAGATCGCTCACCTTATTATGTCTCCCTTTGAAGGGAAAGGCCTTAGAAAGACGACTTTGCCTTCTCTGCCTCCATCTGTCCGTGTCCAATATATGGATCTGGAAGTGTCCATTGTGTATCTCCAAATTCCCTGAGCAGTGCATTGTGGCTTTTTTGAGAGGTTACCACAAAGTCATCGAGTCGAATGCAGTTGTGTGATCACAGGTTAGGAAAGTTCCAACTGGGAGTGGTGAGACCCCTTTTAATGGGTTTTTTGAATGATGCTCCCTGTTGCATCCAAATATAGAATATCGTCCACTGTCCTCTGATGGTATATTTCTATGGTCTTCTGAGACCATAGCATTACACTTTTAGggtttaaaattacattttgcagCATGTCATCATCAGTGCCTGCTTGTTCCTCAATCATTAGCTGCAGGCTCATCATTTCATTctcatgctttctttcttttttttcggTGCTGGCAAGAAATCACTTTTAAAACTCCAGGACTTGGAGCTTGATCTCTGCATCCAGATTCCACCACAGGTTCTTCCAAATTATGCAGAGATTCACGATACAGTGCCCTGGGTGGTTTTCCACTTGGTGTCATCCCTATTTCTTTCCGAGCTTCAGCTCTAATTGGTCTCCTCTTCAGCTCCTCTGTACTGTGACACACAGGATCTCCCTGAAAGtgtttttattcactttaggGTTCCATCTCCACGGTCCCTCTGATCCTCTCATTGCCCAGCTGGGAGGCTCAGTGATGCTGCCCTGCTTTGTAGAACGTCCTCTACCAATAGAAGAACTGGAAGTGGAGTGGAAAAGAAATGACTCTGAAACTCTAGTGCACTTGTGGCAGGAGGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCGTGAAAGAGCTCATTTCTTCACTGAGGAGATCGCCCATGGaaacttctctctcttccttacAAATGTGACCCGTGAAGATGTAGGAGTTTATAAGTGTGCTGTTTACACAAACCTGGACTCTGATGAAACTCTGATTGAGATAAAGGAGATTGAGCGCTTGATCGTGTCTGGAGGCCACGTCATATCTGCTTATGCTGGTGAAGATGTCACTCTGAATTGCTCTGTAGACTCAAATATCCCACCGGAAAATATAGAAGAGGTGTCATGGAAGAAAATGGATGAAGATATCTTAGTGCTGCTTTATCAGGAGAGTGAGGTCCTGACAGACTCATCCcatgagagatacagagacagagtcGAGTTCTTCAGTGCTGAAGAAAGGAACAAAGGAAACTTCTCATTGAGACTGAAGAGTGTTCAAACTGAGGACAAAGGGCTGTATATATGTTTAGCATTCTCTGGGGCATTATCAGATAATACAACTGTGGAAGTGCAGCAGCTGGGTTTTTCCTCAATGCATATTGGAATTTTTGTTCTATGTATACTTGGATTTGTAATTGGATCACTTATCCTAGGCTACCTATCTTttacatcttttaaaaatgaagatgACAGCAGAAGAGCCCTAGCTATACACTGTGCGCATGTCCTTTCTCCTAATATTACTATGTTTATTGTCTTCATCCTTTGGGGTGTTACTGAGGAACCCAAGGTCAATTGTCTCCAGTCCTCCATGTCTAAGAAATGCTACAAAGCAGTGGCCATGTCTGTCAGAGCCCTGAATGCTTCATCTTTGCTCATGGCCTGTCAGGAAGATATGACAGCCTCACCCAGCCCAGCACTGTGGGACGAGATGTGCCTGGTCACAGATCTCTGCCTGCGCCTTCACAGATGTGCAGTTCTTCAGTGAATATCGCTTAAATTGTACCTCCCCAGGAAGCAAACGGCTCCCTCCCAGACACCTCAGCAGATGTTCGCTCAGGCTGTAGCCCGTCCACCCGCCTACTAAAAGAGCCTTCAGAGCCTAGAGGCACAAAGAAGCCAGGCTGATAAGGCCAGAACCTCATGAGGGATTTTTACTGAAGCAGCAACTTGTTCAGCACTTAATTTTGTTAGGATCTTTTTCCTACTTTGGATCACTCTGCATTTGACAACATTTCAAGATTATCTCCACCAGTTAATTAACCGCTTGGCAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579296.1 lncRNA upstream 75195 8047 ~ 8515 (+) True LOC113537089
TU223110 lncRNA downstream 51592 157512 ~ 182875 (+) True G188466
XR_004579155.1 lncRNA downstream 138003 243923 ~ 254748 (+) True LOC113535322
XR_003403586.2 lncRNA downstream 138003 243923 ~ 254748 (+) False LOC113535322
TU223262 lncRNA downstream 403110 509030 ~ 511976 (+) False G188605
TU223264 lncRNA downstream 403110 509030 ~ 511049 (+) False G188605
XM_034309126.1 mRNA upstream 12553 14641 ~ 71157 (+) True LOC113536897
XM_034309262.1 mRNA downstream 15347 121267 ~ 125839 (+) True LOC113535310
XM_026928418.2 mRNA downstream 28317 134237 ~ 136788 (+) True LOC113535195
XM_026928419.2 mRNA downstream 28317 134237 ~ 136788 (+) False LOC113535195
XM_026928106.2 mRNA downstream 31601 137521 ~ 222419 (+) True ccser2b
XM_026928107.2 mRNA downstream 31601 137521 ~ 220557 (+) False ccser2b
XR_003403557.2 other downstream 31601 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 1557172 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 2654773 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 2864205 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 2864205 2970125 ~ 3021609 (+) False LOC113547538

Expression Profile