Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309279.1 |
| length | 1232 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 9 |
| gene id | mrpl38 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 19863312 ~ 19871403 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005840 | ribosome | cellular_component |
| id | description |
|---|---|
| K17419 | MRPL38; large subunit ribosomal protein L38 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU235786 | lncRNA | upstream | 6832 | 19792634 ~ 19856480 (+) | True | G199161 |
| TU235663 | lncRNA | upstream | 436717 | 19426380 ~ 19426595 (+) | True | G199051 |
| XR_003402870.2 | lncRNA | upstream | 548497 | 19309483 ~ 19314815 (+) | True | LOC113527366 |
| TU235481 | lncRNA | upstream | 1038751 | 18823633 ~ 18824561 (+) | True | G198901 |
| TU235464 | lncRNA | upstream | 1094622 | 18768393 ~ 18768690 (+) | True | G198886 |
| TU235814 | lncRNA | downstream | 5338 | 19876741 ~ 19885988 (+) | True | G199187 |
| TU235845 | lncRNA | downstream | 72841 | 19944244 ~ 19944466 (+) | True | G199216 |
| TU235846 | lncRNA | downstream | 79384 | 19950787 ~ 19953308 (+) | True | G199217 |
| XR_004579191.1 | lncRNA | downstream | 363412 | 20234815 ~ 20251474 (+) | False | LOC113527335 |
| XR_003402864.2 | lncRNA | downstream | 363413 | 20234816 ~ 20251474 (+) | True | LOC113527335 |
| XM_026914969.2 | mRNA | upstream | 9562 | 19845510 ~ 19853750 (+) | False | wbp2 |
| XM_026914968.2 | mRNA | upstream | 9562 | 19845512 ~ 19853750 (+) | True | wbp2 |
| XM_034309274.1 | mRNA | upstream | 22286 | 19830602 ~ 19841026 (+) | False | dhx32a |
| XM_026914965.2 | mRNA | upstream | 22286 | 19830607 ~ 19841026 (+) | True | dhx32a |
| XM_026915906.2 | mRNA | upstream | 37434 | 19727671 ~ 19825878 (+) | True | LOC113527774 |
| XM_026915770.2 | mRNA | downstream | 141304 | 20012707 ~ 20017504 (+) | True | gpx9 |
| XM_034309636.1 | mRNA | downstream | 315402 | 20186805 ~ 20200130 (+) | False | LOC113527727 |
| XM_026915810.2 | mRNA | downstream | 315421 | 20186824 ~ 20200272 (+) | True | LOC113527727 |
| XM_034309635.1 | mRNA | downstream | 315423 | 20186826 ~ 20200130 (+) | False | LOC113527727 |
| XM_026915022.2 | mRNA | downstream | 331191 | 20202594 ~ 20228997 (+) | True | LOC113527333 |
| XR_004579324.1 | other | upstream | 296628 | 19526642 ~ 19566684 (+) | False | LOC113527713 |
| XR_004579138.1 | other | upstream | 1051050 | 18806085 ~ 18812262 (+) | True | si:ch211-221j21.3 |
| TU235479 | other | upstream | 1051800 | 18806123 ~ 18811512 (+) | False | si:ch211-221j21.3 |
| TU235296 | other | upstream | 1353153 | 18441886 ~ 18510159 (+) | True | G198737 |
| TU234778 | other | upstream | 1704683 | 18155151 ~ 18158629 (+) | False | pde6gb |
| TU237322 | other | downstream | 2131421 | 22002824 ~ 22003274 (+) | True | G200571 |
| XR_003402874.2 | other | downstream | 2137108 | 22008511 ~ 22012304 (+) | False | srsf2a |
| TU237829 | other | downstream | 2926778 | 22798181 ~ 22871284 (+) | True | mrpl27 |
| TU237980 | other | downstream | 3334263 | 23205666 ~ 23206379 (+) | True | G201154 |
| TU238054 | other | downstream | 3452670 | 23324073 ~ 23329571 (+) | True | G201214 |
