RNA id: XM_034309297.1


Basic Information

Item Value
RNA id XM_034309297.1
length 2401
RNA type mRNA
GC content 0.42
exon number 5
gene id si:ch211-136m16.8
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5540886 ~ 5545885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGACCCTGAAGAACAGGCAAGTGTGTGTGGTATGGGAGATACAGCAGTGGTCAGTCAGGGAACAACTGAGCATGAAAATGAAGCAAGTAAATCACGAATGGTGGATGAGGGTTTGTTTATTCAGCTGGCCTCAACATGGGAAGGGAGGGTCCCTTTAAACGACGGCCTCAAGCTGGAAAATGCCTTACTGTTGCAAGAAAAGGAAGTGATTGAAGTCAGCATTGAGGAAACAAAGCAAGAGACTGTGGGAAAATTGAAGGATGGATATCAGGAAGAGTTCTCAGTGTGTGAGCAGTTCACAGGCACTGACATTGTTGAAGAACAGAAAGTCTGTgacacagaaatgaaagaaacttTGAAACAAACTGAAGTTATTGATAGAAGTGTGGATACTGAATGCCAACTTTTGGAGACAGCAGatatagaaaatgcagaaatatacaaaaaagtGTCTGAGCCCAGCAGAATGTCTGAAGATGAGGACAATAATTTGGCTGTTACAATGAAAATGCAGCAGTTAGAGCAAAgtaacaaagaacaaaaagcCATATCAGAGGTGGCCCTGAATGTAGATCTCAGACAGTTAGATGATACAGCTCATGATCACAATGTACCACAACGGCCAGCTGTAGTGACTAAACAAGACTTTGAGGGTTTCATTACACGACCAGAAACAAGGACAGGAAACAAGATGGAAACTGTTGAAACCACATCAAAATTCAGAGCAGAAGTTGCTGCAGTAGATGTGAAGAAATCAGCTGAGGGAGAGAGTAGCTTTCATGAGCAGCCCATAGATAGAGAAGAGGTGGCTGTACAGGAAATAATGAGCCAGTGCTTGCTTGAACAAGGGTCTTTGCTAGAAGAATCAGCTGAATcaagaataaatgaattgagCTTACTGGAAGCACCATTTAGTCAGTCAATAAAGTCAGTTCCTATCGAGCAATTAGATGACAGTGCAGTTGAGTCTGTTGATGAAATGCAAAGTTCTTCACTGCAGGAACTGGATGAGTGCTCCAGTAAAGCTGAACTAAAAGTGGAAGCAAAGTCCAGCTCTCCTGAACAGACAGCCGAATGTGAGATTTCTTTTGTAGAGAACACTTGTGATAAGTCAATTCTCGATGAGACCCCATTAGCGGATCAGATAAATCAGGATGAGTGCACACTGCAAGATTCAACTGCTGAAGCTTCATCACATAAACTTCAGATTGGACTCTCAGAGGCTTTGTACTTGCCAGAGAGGGAATCAGAACAGGAAGCACTGGAGATGCAGAGAGATTCACAGAAAGATACAGAGGAACAAGAGAGGACTGGTGAGGCAGAGACTGGATTATTAGATGAAATAAAGGATGCTGCATCCTGTTTGGGAGTTGTGGAGGAAATAGCAAAGGAAAGAGAGGATAGTGAGTGGGAATTATTGAGAGAAATGGAGGCTCCTGAAAGAAAAGAGCATAAAAGTGAACTTGAAAGCCATGAGGAAATGTCAGAGAGCAGCATGAATGTGGAATTACTGAATGACACATGGGAATGTAAAAAAGAACTGGTAGCAGAAATGACAGATATTGAAACCATGGTAGTTTCAACAGGTGGGGAGATGGAGtcaatgaaaaaaatggaagaacctatcacagaggaagaaaaggatAAGTGTCAGCTAGTCTTTTCTGAATCGGAAGCATCAAAGGAAATTAGCAAAGAGCATGAAGAAAAATTTGAACATGGAGAATCAGTAGTAGACAGTAAGGAGGACGTAGAGGAAAGAGGCAGACCTGGACTGAAGAGAGGGTTCGAAAAAATGGCAGGAGACAATGACGAGGATAAACCAGGAGTATTAACAGATCTTTTACTTCCATCACAGGCTTCATCCTTGGACTTTACAGTCCAGAAGTCGAAGATCGCTGTTAAAAACCCTCTCGTTCGACCCCCTAAAGACCCTCGTACGCTTATAAACATGGCTTCTGTAGAACCCTTGACTCCTCCTCAACCTTCACAGCCCGGCTTTCTAAAAAAGAGTCATATACAAGGTCCATCGGTACCAAGCAAAGGTGTGATTGGATTCAAACTCCCTGGTCTGGGTGCAGGTTTCCCTGCACTGAGAAAAACCGAAGCTGGAAGAAAAATAAGAGATGGGGAAGATTCAGAGAGTGTAACATCACAGGTACagAAATCTGACTCAGGCTCACAGTCAACAGATGATAATGTCAAGCAAGAGACATCGCCTCCCAAACCAAAATGGACACCACCAAGACAACCTGGGATGGGCAGCCCCCTGATGATGGCAGAGCTGAAGAGCAAACTCAAAAAACCTGCAAAAGAGTAAAAGAAATTTACCAAaagatgaattatttttattttcacatctgtgcaatgtaaataaattagtgtttaaatgatatataa

Function

GO:

id name namespace
GO:0002521 leukocyte differentiation biological_process
GO:0002573 myeloid leukocyte differentiation biological_process
GO:0002376 immune system process biological_process

KEGG:

id description
ko04611 Platelet activation
ko04662 B cell receptor signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226605 lncRNA downstream 51775 5488817 ~ 5489111 (-) False gdpd3b
TU226604 lncRNA downstream 56219 5482620 ~ 5484667 (-) True G191424
TU226592 lncRNA downstream 95719 5442962 ~ 5445167 (-) True G191413
TU226433 lncRNA downstream 153749 5382995 ~ 5387137 (-) True G191279
TU226166 lncRNA downstream 621909 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226650 lncRNA upstream 120288 5666173 ~ 5667846 (-) True G191463
TU226652 lncRNA upstream 121999 5667884 ~ 5669753 (-) True G191464
TU226656 lncRNA upstream 142709 5688594 ~ 5689568 (-) True G191468
TU226688 lncRNA upstream 194093 5739978 ~ 5740199 (-) True G191490
TU226700 lncRNA upstream 222643 5768528 ~ 5776020 (-) False LOC113527291
XM_026915602.2 mRNA downstream 1160 5528649 ~ 5539726 (-) False ppp4cb
XM_026915603.2 mRNA downstream 1341 5528649 ~ 5539545 (-) True ppp4cb
XM_026915248.2 mRNA downstream 14499 5512767 ~ 5526387 (-) True eif3c
XM_026914514.2 mRNA downstream 31489 5502423 ~ 5509397 (-) True prodh2
XM_026915826.2 mRNA downstream 49961 5484691 ~ 5490925 (-) True gdpd3b
XM_026915644.2 mRNA upstream 10072 5555957 ~ 5572889 (-) True si:ch211-180a12.2
XM_026915836.2 mRNA upstream 68545 5614430 ~ 5618990 (-) True aldoab
XM_026915461.2 mRNA upstream 128839 5674724 ~ 5677961 (-) True vkorc1
XM_034309612.1 mRNA upstream 146235 5692120 ~ 5709289 (-) False zgc:92313
XM_034309610.1 mRNA upstream 146235 5692120 ~ 5709267 (-) False zgc:92313
trnav-uac_7 other downstream 67416 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 238681 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 477491 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 588027 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 621914 4918901 ~ 4918972 (-) False trnap-cgg_3
TU226617 other upstream 65235 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 222643 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 1002186 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2912442 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2929374 8475259 ~ 8475340 (-) True trnal-uag_3

Expression Profile