RNA id: XM_034309308.1


Basic Information

Item Value
RNA id XM_034309308.1
length 774
RNA type mRNA
GC content 0.48
exon number 5
gene id lrrc20
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25975031 ~ 25981707 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgatggtgtttccTTGTCGATTTCGGACGCACCCCTGTTACCGTAAAGCGAGTTGCTGGTGTTTTGCGACAGTTAACACAGGCGGCAGCGCTGTAGTCCGATTCCTCTAGCTGGCACAGGATGGGCGAGGCGGTGGCGAACGTCGCCAGGAGAATCAATGCGACGATGgaggacggattagacacgttaGatcTCTCGGACTGTAACCTGATCGGATTCCCTGATGGCGTCTTAAAAATGATTCGTAGCTGTGCAGATAGAATACACAAAATCACACTGGCCAACAACAAACTGAAGAATTTAGGGGAAAAGTTTTTCACCATGTTCAGCCAGTTAAGAGagCTGGATTTGCAGGGAAACATGCTGACTAAACTCCCAGATGCCATCGCAGGAATGCAGCATCTCATCAGCATCGATTTATCCAACAATAACTTCAGTGTTTTTCCCGAACAACTGACGAATGTGCACACGCTGCAGAACATCAACATGTCAGGAAACCAGATCtcagAGGTGCCGTGGGAGCGCGTGTGTGCGATGTCGTCCCTGAGCGCTGTGGATTTGAGATCTAATCCGCTTTCTTCATCGCCAAACGGTTCACAGAAGTTTACTCTcctcacatagacacacagacgTCGTCATCTGCAGTTCATGCTGGATTGGATGAGGAAATCGCTGGAGTAGCTCTCGATCCTGGGCTACGTCCCAAACCTCGTGCTACTGTGCTAATTAGTGTGgcaaaatattacagaaataaaggtTACTATATTTAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239682 lncRNA upstream 8072 25948871 ~ 25968572 (+) True G202541
TU239683 lncRNA upstream 19346 25948871 ~ 25957298 (+) False G202541
TU239598 lncRNA upstream 193933 25692079 ~ 25782711 (+) False G202467
TU239584 lncRNA upstream 279494 25641036 ~ 25697150 (+) True G202455
TU239703 lncRNA downstream 7401 25989108 ~ 25995087 (+) True G202557
TU239706 lncRNA downstream 18041 25999748 ~ 26000315 (+) False LOC117598538
TU239722 lncRNA downstream 51433 26033140 ~ 26033815 (+) False G202567
TU239721 lncRNA downstream 51538 26033245 ~ 26033815 (+) False G202567
TU239723 lncRNA downstream 51538 26033245 ~ 26033815 (+) True G202567
XM_034309498.1 mRNA upstream 2804 25969969 ~ 25973840 (+) True ndr2
XM_026911246.2 mRNA upstream 157716 25803789 ~ 25818928 (+) True star2
XM_034309535.1 mRNA upstream 184964 25773514 ~ 25791680 (+) True tbata
XM_034309478.1 mRNA upstream 231524 25709893 ~ 25745120 (+) True polr3a
XM_034309305.1 mRNA downstream 17944 25999651 ~ 26004969 (+) True LOC117598538
XM_034309306.1 mRNA downstream 18646 26000353 ~ 26005825 (+) False LOC117598538
XM_034309303.1 mRNA downstream 18646 26000353 ~ 26004969 (+) False LOC117598538
XM_034309304.1 mRNA downstream 18646 26000353 ~ 26004969 (+) False LOC117598538
XM_034309543.1 mRNA downstream 303967 26285674 ~ 26426786 (+) True sdk2b
TU239496 other upstream 474016 25498180 ~ 25502628 (+) True G202374
TU239521 other upstream 477725 25497715 ~ 25498919 (+) True G202397
TU239415 other upstream 622354 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 1311119 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1594357 24381787 ~ 24382287 (+) True G201962

Expression Profile