RNA id: XM_034309325.1


Basic Information

Item Value
RNA id XM_034309325.1
length 2065
RNA type mRNA
GC content 0.54
exon number 10
gene id fam13c
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7547063 ~ 7560750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATTATATCACGTGTGAGAACATCGTCCGTCCCTCGGATGCAGGAAAAACCTCCATGCCACGCCTGAGAAACCCCCGCCTCGCCTTCTTACCCCACGCATCCTCTCCTCACTCCCACTCCCTCACTCCAACCAGTTCTCCTATCGCTTCAGCCAGTCTCATCCGGCCTGCCCTGGGGCTTGCTGACGCTAGCAgaccccccccacacacacacacacaacccttctttttctctctctcactctttcccaCCACTGCATGAATAATCCAGGCGAGGGTaggagctgctgctgcagcATTCATATGATCggagcacattcacacacccccTCTTGAACACGCATGTGAACAGCAGCAGAGGCAGGGCtgagtactgtgtgtgtgagagcgagacTGCGGCGGCATTCCAGCTCTCCATCTCTTCGTCTGACACCCGCCGGATTGCTCagtctcctcttcctccatccCAGCCTTTTTGCCTATACCTCGTTGGCATGTTTTGCTTCTGCCTGCAGGGCTCTCTGTTGAAGCTCCAGGCTCTGGAGGAGGATGCCAGCTCGCCACCGGATTCTTCTCCCGATGAAAGCCCAACCAGCATGGGTGGCAGAGAGGAGACACAGCCCCCCTCACGCGGCAGCCTGAGAGATGAGAACAGCCTTCAAGatcgtAGGCAGTCTGAAGGCGACTGCAGCAGTGAACCCCAGCAGAACCCCGGTCCCAGTCGACTCATCTCTTACATTACGGATGGGAACAGCCCTTTACCCTCACCACGCTGTGCCAGCCTCAGCCTCAGCCAGCGCTTCAACACCGACCCTGAGAGTGCACCATCACCTCCCTGCACACAGCATCTCATTCTgcctCGTGGGATGGTCAGACCGGAGACCTCTGATGATGATAAAGACACACCATCTATTCCGTTACTCACTAAACACATCCAGACGCTCAAGAGAAGAATACGCAAGTTTGAAGAACGCTTCGAACAAGATATGAACTACAAGccctcCCATAATGACAAGTCTGCTAATCCAGAGATATTCAAGCTCATGAGTGAACTGGCCAAGTCTCGCAAGCAGCTCAAAGATCTGAAGCTGAGGCAGTCAGTGGAGGAATCGCGAGGCCAAGAGAACGACCAGCCCACAGGCACCTGTAGATACTCAAACGGCCTGCATGAGGCGccggagcagcagcagcagcagcacaaaccCTCTCTGGAGGAGACGGTGGACATGCTGCTGAAGCGACTGAGGGAGAAACGCCAGGCCCTTGGCCTCCCAGACAACATGAAGGAGATGACCCAGAGGCAGATGGCGCTGGAGAAGCTCACGCTGCAGAAATGCCTGCTGTATTTCGAGAGTCTACACGGACGCCCTGACACCAAGCAGGAGAGAAACCTGGTGAAGCCGCTCTATGACAGATACCAGATGGTCAAGCACCTGCTGTGTGCCACACCCACCATAACCACCATCgaggaagaggaagggtCTGATGAAGAGTACGTGCAGCAAACTCAGCCCCCACGGCAAGCAACCCCAGAGTCCATGGAGGAAGACGAGGAAGGGGACAGCGACACGGCATTTGTGTCCCCTCTGGACGAGGTGAAAGCGGTTCGACAGCCTGCCCTCAACATGTCCAACCTCCACGCTGCTTCCAGATCTGAGCTGCTGCAGTGTCTGCGTGAGACTCGTGCGGAGAAGAAGAGGAGACGGAAAGCCATCAGGGAGTTTGAGGAGCAGTTCTTCAGACAGATGGGCAGGACTGCACAAAAGGACGACCGGATTCCCATGACAGAAGAATATCAAGAGTACAAAAGCCTGAAAGCCAAACTGCGCTTGCTGGAGGTTCTGCTTAGCAAACAGGAAACCACATAGACTATTcaaggaatatatatatatcctggtTTGCCTTTCAAAACAGATCTAGACATTTGGACCAAACCATGTTTTTGCTTACATATTACATGCTCGTGCCATAATAACACTACAATGCACTTTAACAATGATTCTACGTTGAGCTGCCCAGACCTCCCAGACACAGGGTTTGATCTaactctaagaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227790 lncRNA downstream 118180 7428587 ~ 7428883 (-) True G192437
TU227786 lncRNA downstream 146700 7400027 ~ 7400363 (-) False ipmkb
TU227735 lncRNA downstream 234176 7228390 ~ 7312887 (-) True G192385
TU227404 lncRNA downstream 731628 6813165 ~ 6815435 (-) True G192074
TU227943 lncRNA upstream 20608 7581358 ~ 7583165 (-) False ccdc6b
TU227946 lncRNA upstream 68561 7629311 ~ 7630373 (-) True G192545
TU227929 lncRNA upstream 161255 7722005 ~ 7740008 (-) False ank3b
TU227921 lncRNA upstream 161255 7722005 ~ 7767502 (-) False ank3b
TU228003 lncRNA upstream 279613 7840363 ~ 7841460 (-) True G192583
XM_026914632.2 mRNA downstream 104351 7435509 ~ 7442712 (-) False zgc:171971
XM_034309437.1 mRNA downstream 104351 7435509 ~ 7442712 (-) True zgc:171971
XM_026915835.2 mRNA downstream 119229 7421966 ~ 7427834 (-) True ube2d1b
XM_026915386.2 mRNA downstream 128685 7400000 ~ 7418378 (-) True ipmkb
XM_034309522.1 mRNA downstream 314988 7049810 ~ 7232075 (-) False pcdh15b
XM_026914557.2 mRNA upstream 13326 7574076 ~ 7579872 (-) True slc16a9b
XM_026914606.2 mRNA upstream 20600 7581350 ~ 7595881 (-) True ccdc6b
XM_034309148.1 mRNA upstream 40468 7601218 ~ 7767512 (-) False ank3b
XM_034309143.1 mRNA upstream 40468 7601218 ~ 7739995 (-) False ank3b
XM_034309155.1 mRNA upstream 40468 7601218 ~ 7722757 (-) False ank3b
XR_004579320.1 other downstream 952673 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1771043 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1933109 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2073593 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2244858 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 897577 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 914509 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1286912 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 1516039 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 1516368 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile