RNA id: XM_034309349.1


Basic Information

Item Value
RNA id XM_034309349.1
length 5255
RNA type mRNA
GC content 0.51
exon number 30
gene id aclyb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1579297 ~ 1602265 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCACACTCTCGCGCGCGTCGCGAGAGTCGCGTGTCGCGCGCACACTCGCGTGTCGCGTCGCGACGACGCGTGTCGCGTCGCGCAGACACGCGCGTGTCGCGTCGCACCGCCGTCGCGCACGCTCACGAAGTGTGTTTCGCGTCGCGAGAGAGTGCGCATCTCTGCTAAAGCCATCTCGGAGCAGACGGGGAAGGAGTTCCTGTATAAACACATCTGCACGACGGCGGCTGTCCAGAACCGCTTCCTGTACGCCACCGTCACAGCCGAAACCGACTGGGAGCGACTGGCACAGGACCACCCATGGCTcctcactcagCAATTGGTCGTGAAGCCCGATCAGCTGATCAAGCGCAGAGGGAAGCTGGGTCTGGTGGGCGTCGACCTCGACCTCCAGGGCGTTCGTGATTGGCTGAAGTCACGTATGATGAAAGAAACTACAGTCGGAAAGGCGAAGGGAATCCTGAAGAAATTCCTGATCGAGCCGTTTGTGCCGCACTcgcagGAGGAGGAGTTTTACGTGTGTATCTACGCCACACGTGAGGGAGATCACGTGCTTTTCCATCACGAGGGAGGCGTGGACATCGGGGACGTAGACTCCAAAGCACAGCGCCTGCTGGTCGGCGTGGACGAGAAGCTCGACACGGCCGCCGTGACCGAGCAGCTGCTCACACACGTCCCTGATGAGAAGAAGGAAGTTCTGGCCAGTTTTATCGTCGGACTCTTTAACCTGTACGAGGATTTGTACTTCACCTACCTGGAGATCAACCCGCTCGttgtCACGCAGCAAGGTGTGTACGTTCTGGACATGGCGGCCAAAATCGACGCCACGGCCGATTTCATCTGCAAACCAAAGTGGGGTGATGTGGAGTTTCCTCCTCCGTTTGGCAGAGAAGCTTATCCTGAGgaagcCTACATAGCAGATCTGGACGCTAAGAGCGGCGCGAGTCTCAAACTCACCCTGCTGAACCCTCGAGGGCGCATCTGGACCATGGTGGCAGGAGGCGGAGCCTCCGTCGTCTACAGTGACACTATCTGCGATCTGGGTGGAGTGGACGAGCTGGCGAACTACGGCGAGTACTCCGGCGCTCCAAGTGAACAGCAGACGTACGACTATGCCAAGACCATCCTCTCCCTCATGACCCGCGAGAAACACCCCaacgGTAAAGTTCTGATCATTGGAGGAAGCATCGCTAACTTCACCAACGTCGCAGCTACGTTTAAGGGTATAGTGAGAGCCATTAAGGACTATCAGGGTCCTCTGAAGGAGCATGAGGTCACTATTTTTGTGCGTCGAGGAGGACCGAATTACCAAGAAGGCCTCAGGGTGATGGGAGAAGTCGGAAAGACCACTGGGATTCCCATCCACGTGTTCGGCACAGAGACTCACATGACTGCCATTGTTGGCATGGCGCTTGGACATCGCCCAATCCCGAATCAGCCTCCGGTTGCCGCCCACACTGCCAACTTCCTGCTTAATTCGAGTAGCAGTGCTGCGACTCCAGCAACAACCAGAACTGCTTCATTTTCTGAGCACAGACCTAACTGCGACATCACACCGGCTAAAAAGCCCAAACCCGGAGTTCCACCAGTGTCCTCTCTCTACCAAACTTGGTCAGTGAAGAGTGCATGCAGCACCAGTGTCAAAGAGCACAAGAGCACAGCAGAGCGGAGCGGAGcGAAAGCTACCACTCTGTTCAGTAAGCACACTAAGTCTATAGTGTGGGGGATGCAGACGCGAGCGGTTCAGGGAATGATGGACTTCGACTACGTCTGTTCTCGTGATGAGCCCTCAGTAGCCGCCATGGTTTATCCGTTTACCGGAGACCACAAGCAGAAGTTCTACTGGGGTCATAAGGAGATCCTGTTACCCGTGTACAAGAACATGGCCGACGCCATGAAGAAGCACCCGGAAGTGGACGTCCTGATCAGCTTCGCGTCTCTGCGCTCGGCCTTCGACAGCACTATGGAGACCATGAACTACCCGCAGatcCACACCATAGCGATCATAGCCGAGGGAATTCCTGAAGCGCTGACGCGGAAACTCATCAAAACCGCAGACGAGAAGGGGGTCACCATCATCGGCCCAGCTacgGTGGGCGGGATCAAGCCCGGCTGCTTTAAGATCGGGAACACCGGCGGGATGCTGGACAACATCCTGGCGTCGAAGCTGTATCGCCCAGGCAGCGTGGCGTACGTGTCCCGCTCGGGCGGCATGTCTAacgagctcaacaacatcatctCTCGCTCCACGGACGGCGTGTACGAGGGCGTGGCCATCGGAGGAGACAGGTATCCCGGCTCCACGTTCATGGACCACGTGCTGCGTTATCAGGACACGCCCGGGGTGAAGATGATCGTGGTGCTCGGAGAGaTCGGCGGTACAGAGGAGTATAAGATCTGTGAGGGCATTAAGGAGGGCAGAATCACTAAACCTGTGGTGTGCTGGTGTATCGGTACCTGCGCTACACTCTTCTCCTCCGAGgtgcaGTTTGGCCACGCGGGTGCGTGCGCTCATCAGACCTCGGAGACGGCTGTGGCGAAGAACATGGCACTGCACGAGGCCGGAGTTTACGTTCCCAGGAGCTTCGACGAACTCGGAGACGTCATCAGgacgGTGTATGATGATCTGGTGGCGAGTGGCGTTATTGTTCCAGCACAGGAAGTTCCCCCTCCCACAGTGCCGATGGACTACTCCTGGGCCAGGgagctggGTCTGATCCGTAAGCCGGCCTCCTTCATGACGAGTATCTGCGATGAGCGGGGACAGGAGCTGATCTACGCCGGCATGCCCATCACTGAGGTCTTCAAGGAGGAGATGGGCTTAGGAGGAGTTCTCGGCCTGCTCTGGTTCCAAAGGAGGTTGCCCCGTTATGCGTGTCAGTTCATTGAGATGTGTCTGATGGTGACGGCGGATCACGGCCCCGCTGTATCCGGAGCTCATAACACCATCGTGTGCGCCCGCGCCGGGAAAGACCTCGTCTCCAGCCTCACATCCGGCCTGCTCACCATCggtgATCGGTTCGGTGGCGCTCTGGACGCAGCTGCTAAACAGTTCAGTAAAGCGTTTGACAGCGGCATGCTGCCCATGGAGTTCGTCAACAAGATGAAGAAGGACGGCAAACTCATCATGGGCATCGGACACCGCGTCAAATCAATTAATAATCCGGATATGAGAGTGCAGATCCTGAAGGACTTCGTGAAGCAGCACTTTCCCGCCACACAGCTGCTGGACTACGCACTTGACGTCGAGAAGATCACCACCTCCAAGAAGCCGAACCTGATCCTGAACGTGGACGGTTTGATCGGCGTGGCGTTTGTGGACTTGTTGCGAACGTGTGGAGGATTCACTCGagacGAGGCGGACGAGTTTGTGGAAATCGGCGCTCTGAACGGGATTTTCGTTCTGGGACGCAGCATGGGCTTCATCGGTCACTACCTGGACCAGAAGCGATTGAAACAGGGCCTGTACCGCCACCCGTGGGACGACATCTCCTACGTGCTTCCTGAGCACATGTCCATGTGACCGTCATGGCCGCCGTGCTTAATTCGGAGTATAACTCGGAGGTGGAGGGAGAATGAAGTGCGCTATTTATATTCACGTGAAAATTAGGGAACACTTATTTAACGTCCGCCGCTgcgtctcacacacatacacacacacacacacacacacacacacacacactccaacagcAAGAACACTGCGATGTCATTACAGCCTGCTAACATGCTAGCATGATAACTAACTGGTTTACTAACTAGTGTAACAACCAGCTGGTTTCATAACTAACTATGTGGCTAATTACTTAACCTAATAACTATTTGTCTTACAAACAGGCTACCAAATAACTAGTCAGCTTGTTAACTAGCTTCTAGTAGTTTCATGACTAACTGTTTTGCTAATTAACTAGCTCAAGAACTAGCAGACTTGCTATCAAGCTACTATGATGAATAGTCAGCTCGATGACTAACTTCCTATCAGTTTCCATTCAGCTAGCATAATTACTAGCTGGTTTCATACTTACCTCTTTTTGTTCCTTGAGTACTAGTAGGCTTGCTTACAATCATGATAACTCACTAGCTGGTTTCATAACAAGCTGTTTCACTAACTAACTGGATTACACTAGCTAATTGGAAGCTAGTTATCACTTTGGCTACTGTGATTACTAGGCGCTTTAAAAACTAACTTTTGCTAATTACCAACCTTGACAACTAGCTTCCTTGATAACTAGTGTAATAACTAGCTGGTTTCATAACTAACTACTTGTTTTGCTAATTATGTTAGCTAATAGGAAGCTAGTTCTCAAGCTGACTAGAGTTCATGGCAGCTTGTTAGCAAGAGTACTAGTTCTTAAGCTAGGTAATTTGCAAAAAACAGTTCGTTATGAAACCAGTTAGTAGGTACACTAGCCGATAAATGACAACTAGTAGTCTTGCTGACCATGATAACTAGCTGGCTTGATAACTAGCTTATTATTTGCTAGTCTACtttgatagctagctagcttgacAAATGTTTAGTGTTATAAATTGTGGAGCAAAGCATTCTGGGTAATTTTTGGTCTTGAAGTTCACTAGTGGACGAGGGTGCGTTTAAAAAGCAGGACTGGGACGCGGCCAAACTGCaagataacttttttttttttttaaagttttttttttttttagatttttttagttTAGCTTATTAATGATAAAATCAGGAAGAACCCGACACAcccacgcgcgcgcgcacacacacacacacacacacatttgtctgcTTTTCTCAGTAATGAACATAATGAAAGCAGCTCACACACTCGCAACTCGTTACTGAAACTGGAAGACGATTCAGTTTGACGTCtgctgttactgtgtgtgtgtgagagagagagagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgagtttgAGTGTTTCAGTAATGTGTTGATGTTACAGCTTCCCTCTTCGCCTCAGTAACGGTTGTATCTCCTTCACCAGCCTGCTGCATGACCTGCCCTCCttctctaatcacacacacacacacacacacacacatcactaacTGTTTATTCTGGTGTTTGGGCGAGACTGGGATTCTCCGCTACAACcctgtttttatgtttctgtatttaaatgtgaaatcaAGCAGCTTTTTTGCtatcttctgttttctttcctttttttaaaaaatatatgctaAAAACTGTAATATTGTAGAATATAATAAAGTCCTTCTTGGTtacctcc

Function

GO: NA

KEGG:

id description
K01648 ACLY; ATP citrate (pro-S)-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223911 lncRNA upstream 32715 1545798 ~ 1546582 (+) True G189170
TU223461 lncRNA upstream 528677 1046500 ~ 1050620 (+) True G188770
TU223448 lncRNA upstream 603432 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 605438 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 654807 924285 ~ 924490 (+) True G188749
TU223946 lncRNA downstream 7561 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 60832 1663097 ~ 1665813 (+) True LOC117598477
TU224019 lncRNA downstream 173340 1775605 ~ 1776432 (+) True G189245
TU224061 lncRNA downstream 260937 1863202 ~ 1863652 (+) True G189280
TU224082 lncRNA downstream 285385 1887650 ~ 1887870 (+) True G189293
XM_034309527.1 mRNA upstream 13534 1564045 ~ 1565763 (+) True LOC117598650
XM_026928539.2 mRNA upstream 87086 1488171 ~ 1492211 (+) True LOC113535294
XM_034309243.1 mRNA upstream 125321 1404303 ~ 1453976 (+) False LOC113535212
XM_034309396.1 mRNA downstream 107684 1709949 ~ 1714497 (+) True LOC117598580
XM_026928117.2 mRNA downstream 236498 1838763 ~ 1844749 (+) True LOC113535035
XM_034309399.1 mRNA downstream 243963 1846228 ~ 1851194 (+) True LOC113535036
XM_026928118.2 mRNA downstream 245356 1847621 ~ 1851194 (+) False LOC113535036
XM_034309398.1 mRNA downstream 273389 1875654 ~ 1882978 (+) False foxh1
XR_003403557.2 other upstream 1358929 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 60827 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1158428 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1367860 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1367860 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1636179 3238444 ~ 3239216 (+) True G190028

Expression Profile