RNA id: XM_034309356.1


Basic Information

Item Value
RNA id XM_034309356.1
length 1203
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC117598564
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6091710 ~ 6097905 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTGGTGCCCGGAATGTGATCGACCTTGTGATACTGGAGCAGTTTGTCGCCTAACTTCTGTAAGGGACAGCggagtgggtccagtgccactgcCCAGCGACGCTCGATCAGGCCATCTAGCTGGCAGAGAACCACATGGCGGCGTATCTGGGGGCAGACGAGCCCCTCTcttctccatgtctctctcagTCACTCTCGTGgctctccccctcctcctcgCTCTTTCCCCATCCCTGCTCCATGGAAATGGGGGCCAATTCCCCCAAAACCCATTCCCCGAACCCATGCTTTCCCTCCCCGTTCCTCTCCTTGTGTCTTTCTCCTCTTTCCCCCAGGACCGCTGCAACATGATGGAGGTGGGGGCGTTGGTCTGGATCCCTGATGCACCGCAGGCCTCCCCCGATCGAGCCGGGTTGTACTGCATACCGGGACAATGGGCTGAACATAACCTGAATGTGACGACCTTCTGTGCGCGAGCTTCACCTTACCGACTTGTTTCCGAATTCTTCGGTAGGAATTTCTCCGGTGTGAATCTcacacacagTGTGAGCTCTGGCTTCAGCTGCCGATGGATCAATCTTAGATTCAAGCAGCACCATGCGACATGTTTAGAACTGCTTAGAGAAATGGGAGAGGAAATCAGCGTCAATGCCTCCATCCCGGATAACTGGCATCACTGGTTCTTTAACCAAAGCTATTCTCagCCAGAGAAACAGATCTGGTTCATCGTTCAGACTCTGGATGAGGTCTCTCGTTTATTGGAAGATTCAGACTCTGTCTCCTGGAACAAGGACAAGCTGGAAACTTTCTTACATATGCTGGATCTGCAGGCCAATGGACTACGCTCATGTcttgagcacaaaatgaaaaagaacaaaagattGCCCTTATACTTCAAACAACTAAGAGATCTCACCAAGAACGTCAAGCAGGAGAAGAACGAGGCATGGGAGTGGATCAGAAAAGAGCTGCTTCAACTGTTCGGGCTGTTGGACTTTTTCCCTGCTGTCTCTGTGAATCATGCTGAAAATGACAACTAATAATCAGTTGAAATCTTGCAGTGGTGACCAgtagattgtgagttcaaatcccagaaccaCCAAAGAAAAGCTGTTGGCTGTTTTGAAAGACTCTTAAAGGCTTCAAGTTATATTAATTATTCGGGTTTTGCTCTATTCATAGTACGCAAAATTAGCAGTGTA

Function

GO:

id name namespace
GO:0051607 defense response to virus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226872 lncRNA downstream 153497 5935653 ~ 5938213 (-) False LOC113527731
XR_003402884.2 lncRNA downstream 153531 5935856 ~ 5938179 (-) False LOC113527731
TU226871 lncRNA downstream 153547 5935539 ~ 5938163 (-) True LOC113527731
TU226870 lncRNA downstream 153547 5935653 ~ 5938163 (-) False LOC113527731
TU226873 lncRNA downstream 153547 5935653 ~ 5938163 (-) False LOC113527731
TU227047 lncRNA upstream 120801 6218706 ~ 6219394 (-) True G191762
TU227049 lncRNA upstream 121907 6219812 ~ 6220381 (-) True G191763
TU227058 lncRNA upstream 153517 6251422 ~ 6252182 (-) True G191772
XR_004579134.1 lncRNA upstream 161960 6259865 ~ 6261598 (-) True LOC117598466
TU227074 lncRNA upstream 192506 6290411 ~ 6290912 (-) True G191786
XM_026915383.2 mRNA downstream 80186 6006693 ~ 6011524 (-) True zgc:163073
XM_026914816.2 mRNA downstream 91542 5969736 ~ 6000168 (-) False mapta
XM_034309116.1 mRNA upstream 3176 6101081 ~ 6102526 (-) True LOC117598474
XM_034309357.1 mRNA upstream 11076 6108981 ~ 6110127 (-) True LOC117598565
XM_034309552.1 mRNA upstream 31202 6129107 ~ 6135120 (-) True LOC117598661
XM_034309551.1 mRNA upstream 36039 6133944 ~ 6135114 (-) False LOC117598661
XM_034309406.1 mRNA upstream 55885 6153790 ~ 6154882 (-) True LOC117598586
TU226699 other downstream 315690 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 477756 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 618240 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 789505 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 1028315 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 450166 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2360422 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2377354 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2749757 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2978884 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile