RNA id: XM_034309379.1


Basic Information

Item Value
RNA id XM_034309379.1
length 2660
RNA type mRNA
GC content 0.49
exon number 9
gene id ctbp2l
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24132906 ~ 24235084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATCATCGACAGAATGATGTACCCTGCTAATAgtatCAGGCCTCAGATCATGAACGGCCCCATGCACCCCCGCCCGTTGGTGGCACTGTTGGACGGACGTGATTGCACTGTAGAGATGCCCATTCTCAAAGACCTGGCAACTGTGGCCTTCTGCGATGCTCAGTCCACACAGGAGATCCACGAGAAGGTGCTGAATGAGGCAGTCGGTGCCATGATGTACCACACAATCACTCTGACCCGCGAGGACCTGGAGAAGTTTAAAGCTCTACGCATCATCATCCGCATCGGCAGCGGATACGACAACGTTGACATCAAAGCCGCGGGGGAGCTGGgCATTGCGGTGTGTAACATTCCATCAGCGGCGGTGGAGGAGACGGCGGACTCGACCATGTGCCACATCCTGAACCTGTACAGGAGAAACACGTGGCTGTACCAGGCTCTCCGTGAGGGCACGCGGGTCCAGAGTGTGGAGCAGATCAGAGAGGTGGCGTCAGGAGCGGCGCGAATCCGCGGAGAGACACTCGGCCTCATCGGCTTCGGGCGTTCGGGGCAGGCGGTAGCGGTCCGGGCGAAGGTGTTTGGCTTCAGCGTGATATTTTATGACCCGTACCTGCAGGATGGTCTGGAGAGAGCGCTGGGTGTACAGAGAGTGTACACACTGCAGGACCTGCTGTACCAGAGCGACTGTGTGTCCCTGCACTGTAACCTGAACGAACACAACCACCACCTGATCAACGACTTCACCATCAaacagatgCGTCAGGGGGCGTTCCTGGTGAACACCGCTCGAGGTGGGCTGGTGGATGAAAAGGCTCTGGCTCACGCTCTGAAGGAGGGACGGATACGAGGAGCAGCACTCGACGTCCATGAGAACGAACCGTTCAGttttgcaCAGGGACCTCTGAAGGATGCTCCGAATCTGGTCTGCACTCCACACACAGCATGGTACAGTGAACAGGCCTCTCTGGAGATGAGGGAGGCAGCGGCTACGGAGATCCGCCGAGCTATCACcggtcGCATCCCAGACAGCCTCAGAAACTGTGTGAATAAGGAGTTCTTCGTCACCACTTCAGCCTGGGGGGTGATGGAGCAGCAGACTGTACACCCTGAGCTTAACGGCGCTGCCTACAGGTTAAACACGTTCCCGCCGGGCATGGTTGGCGTGGCACCAGGGGGCATCGCCGCGGCGATGGAGGGCATAGTGCCGGGCGGAGTGCCTGTAACACACTCACTACCATCGGTCACACACCCGTCGCAGGCACCGTCTCCAAACCAGCCGTCCAAACACGGAGAGAGCAGAGAACATCTGACTGAGCaatagcaacacacacacacacacacaacacacacacacacacacacacacacttgtagcACAAGCTCTTGGAAACATACAttaatacactaatacacacacacaataactctATAGCGTCTTTCCAATGAAACCACTCGCCTTCCGGGACcaagacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacgttgCAGCTCTTGGGACATTAAAACTTTATACtctttttcatttgatttttcttgttcagttttttttttcttcttttttgggAAAATGGACGAAGCCTCTCCCACCACCTTGTGTCTCATTGGACGATGCACTTTTTCATCCACCAATGGGAAAGCTCGACATGATGCGCTTACCAGACCATGGCCCATCCCTCCACAGACCCCGCCCACCTCCCTTTGTTGTTAGTTTATGTTGTTTTAGGCTCTTAGCAGCATTTTCGGTTCTTTTATCTTCAGCGTGAGAGGATATTAACTCGAAGAAGTGGTTATAAAATAtagctatatatatttatcagacaaagaaaaagaaaaaaaatgagcgATTGCCCACCAGCAGGTGATCCACGTTAACCCTTTCCTGGCCACGCCCACCCACCAGTCGCCGAGAACAAAATGTCTACCAAATGACAGCGTACTCCTGCTAAGGATGATCTTTATATCatcatttttctgtattatCCTGATTGTTGTGTTTCGGGTCGGAAGGCAGCTGCTTTCTGAACTCTTTACTTTGGATATATTTGAAGCGATCTCTCATTCTGTTTACCgaatcataaaatatttcatgaacGTTTTTCGACAAACATCGCAGAATAAACTCTTGCTCGGAATGAGGAGCTGTTTTTCCTAGCTAAAGTTCATGTACGTGTTCGTATAGAATCAGAAGCTAGCTTAAATGATGTGACGTCACAGGAAACGTTTTAGCTTATATCATTTCTTTGCTAACTTGATAGGCACCAAGCCAGCCTTTCTAGCTACCCTACCTATCCTTAGTATCTAGTGAACAGTCCTCTAGCTGCGTTCATCAGCAGAACTTCGGCTAGCTCGGGATCCATCCTCAGGTAAAAGAATAAACTAGCGATAGTGAGCAGCATGCTGAAAGTTCTGGTGTATGATGAAACTTAAGGGCttcacaaaatgttaaaatgttgaaaaaagaaaCTTCGAAGAATGAGGTTGATAAGAAAGAAATgctttgtttcacagacattaaatgtaaccataaacggataaaaagtatgacgtcatttttttaataactaaaaatctttaattgttggcaaaataCTTataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238756 lncRNA upstream 54532 24156506 ~ 24156965 (+) True G201793
TU238693 lncRNA upstream 168254 24038938 ~ 24043243 (+) True G201753
TU238523 lncRNA upstream 350521 23775381 ~ 23860976 (+) True G201604
TU238518 lncRNA upstream 448231 23763065 ~ 23763266 (+) True G201600
TU238157 lncRNA upstream 471157 23738357 ~ 23740340 (+) True G201297
TU238732 lncRNA downstream 419 24235503 ~ 24236550 (+) False G201782
TU238736 lncRNA downstream 419 24235503 ~ 24236779 (+) True G201782
TU238812 lncRNA downstream 101940 24337024 ~ 24338068 (+) True G201843
TU238813 lncRNA downstream 103050 24338134 ~ 24338730 (+) True G201844
TU239003 lncRNA downstream 245173 24480257 ~ 24482442 (+) True G202007
XM_026914558.2 mRNA upstream 130885 24067539 ~ 24080612 (+) True mmp21
XM_034309132.1 mRNA upstream 146513 24050994 ~ 24064984 (+) False uros
XM_026914779.2 mRNA downstream 32194 24267278 ~ 24273823 (+) True hpdl
XM_026915619.2 mRNA downstream 49997 24285081 ~ 24323614 (+) True fam53b
XM_026915299.2 mRNA downstream 145217 24380301 ~ 24398447 (+) True oat
XM_026915268.2 mRNA downstream 220575 24455659 ~ 24505970 (+) False LOC113527444
XM_026915269.2 mRNA downstream 220575 24455659 ~ 24505970 (+) False LOC113527444
TU238026 other upstream 812837 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 881926 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1005118 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 1340213 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 2199193 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 146703 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 426141 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1094125 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1262631 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1263096 25498180 ~ 25502628 (+) True G202374

Expression Profile