RNA id: XM_034309383.1


Basic Information

Item Value
RNA id XM_034309383.1
length 3960
RNA type mRNA
GC content 0.57
exon number 27
gene id oplah
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1888816 ~ 1903996 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCAGCAGGGCAGGAAGTTCAGCATGGCCGACTCTGAGGGAAAGTTCTGTTTCGCCATCGACCGCGGCGGAACCTTCACTGACGTCTTCGCCCGTCTGCCAGACGGTAAAGAGCGAGTGATGAAGCTGCTCTCGCACGACCCGCAGAACTACAGAGACGCTCCCACAGAGGGCATCCGCCGCATACTGCAACAGgaaacaggaaggagTTTTCCCCGTGATGAGCCACTGGACtcgtctctgattggctggatcCGCATGGGCACGACGGTGGCCACCAACGCGCTGTTAGAGCGGCAGGGAGAAAAGATGGCGCTCGCCGTGACCCAAGGCTTCAAACACCTGCTTCACATCGGCACACAGGCTCGACCTGACCTCTTCGACCtgGAAGTACGAGTGCCCGATGTGCTTTACGAAGAGGTCATCGAAGTGGATGAAAGAGTCGTCCTGAAGCAAGATGGCTGCCGTCTGCCGAGCAAAGAACCTAAGCGGATCGTCAAAGgtagtACAGGTGAGAGTTTAGAGGTGTGGACTGAGTTGGACCTGCAGCGTGTGGAGAGAGATCTGAGAGCCGTGCTGTCTCGGGGAATCACCAGCCTCGCCGTGCTGCTGCTGCACTCATacatgtacCCGGATCACGAGCAGGCGGTGGGCTCTCTGGCTCGGCGGCTCGGTTTCACTCAATTGTCTCTCTCGAGCGAGGTGATGCCGATGATCAGAGCGGTGCCTCGCGGCTACACCGTGTGCGTGGACGCCTACCTCACACCCAAAATACACCAGTACGTCACCGCCTTCACCGCCGGCTTCAAGGGACGACtcgctgacGTGGACGTGCTGTTCATGCAGTCGGATGGGGGTTTGACTCCTATGGATCAGTTCTGCGGTTCTCGGGCGGTTCTGTCCGGCCCAGCTGGAGGAGTCGTGGGTTACGCCCTCACCGCgtacagcaacacacaccacacacccgTCATCGGCTTCGACATGGGAGgtacCTCTACAGACGTGAGTCGCTATGCTGGTCAGTATGAACACGTGTTTGAGTCTACAACAGCCGGAGTCACATTGCAGGCGCCTCAGCTCGACATCAACACCGTCGCAGCGGGAGGAGGATCTCGACTTTTCTtcagGTCTGGGATGTTTGTTGTGGGTCCTGAGTCAGCTGGTGCTCATCCTGGTCCAGCTTGTTATCAAAAAGGGGGTCCACTCACAGTCACAGATGCTAATTTAGCGCTTGGCCGTCTACtcccttcttttttccctcacatCTTTGGTCCTGGAGAGAACGAGCCTCTCTCCATAGATGAAACCATGAGCCATTTCCAGAAGCTCACCAAAGAGATCAACAACTTCCTCTCGAGCAGCCAATCACAATGCGAtggagacaaacacacaaatagtGACAATTCAGAAATGAGCATGGAAGAGGTCGCTATGGGATTCATCAGAGTTGCGAATGAAGCAATGTGTCGACCAATCCGAGCACTGACGCAGGCAAAGGGCCATGATACATCTCAGCACGCGTTGGCGTGTTTTGGAGGAGCAGGCGGGCAACATGCATGTGCCATCGCAcgaacactgggcatgaaaaCCGTCTACATACACAAgtaCAGCGGTGTGTTATCAGCGTATGGTTTGGCTCTAGCGGATGTTGTAGAGGAGGTTCAGGAGCCGTGTTCTCTGcagtacaacacacactcttactcaGAGCTCGACTGCTGGATCCAGCGGCTCTCACAGCGCTGCCACGACACACTGCGCAAACGTGGATTCAGCAGTTCTCAGATCAGTATGGAGGCGTTCCTGCACATGCGTTACGAGGGAACAGACTGCGCTCTCATGATCAGCGCCAGCGAAGCGCCGCCTCACGCTCAGTCCTGCTGTTCCGGAGACTTCCGTACCGCCTTCACCGCACGCTACATGAAGGAGTTTGGCTTCACCATCGCTGACAGACCCATAACGGTGGACGACGTTCGTGTGCGCGGATCAGGAAAATCCGGAATCGGGACAACGGCCACGGCTCGAGCAGGAAGTCAGCCACCAAAACCGAcacagATAACCAAGTGCTACTTTGAGGACCGATATCTGGACACGAGCGTGTTCATGTGGGACGATGTGTCATGCGACCACAGCATCGACGGACCAGCGATCATCATCGACAAGAACAGCACCATCCTGGTGGAACCGGGCTGTTCGGCCCGCCTGACCCCGAGCGGAGACGTGTGTATCGCCGTGGGAACGGACAGCAGGTGTGTGCTGGGGACGGAGCTGAACGCAGTGCAGCTGTCCATCTTCTCTCATCGCTTCATGAGCATCGCAGagcagatggGCCGTGTGTTACAGAGAACCTCCATCTCCACCAACATTAAGGAGCGGCTGGATTTCTCCTGCGCTGTGTTTGGACCCGATGGAGGTCTGGTGTCGAACGCTCCTCACATTCCTGTTCACCTGGGAGCCATGCAGGAGACTGTGCAGTACCAgttgaAGGCGGTAGGCAGCAGTCTGAAGGAGGGAGATGTGATATTGAGTAATCACCCTTGTGCTGGAGGAAGCCACCTGCCCGACCTCACCGTCATCACACCGGTGTTCCGTCATGGCGTGAGCGGCCCGGTGTTTTTCGTGGCCAGCAGGGGGCATCACGCCGATATCGGGGGCATCACTCCGGGCTCGATGCCCCCTCACTCCACCTGTCTCCAGCAGGAGGGCGCGGTCTTCACCTCCTTCAAACTGGTCACTGAGGGAGTCTTCCAAGAGCAGGCGGTCACGGAGGCTCTCCTGGCTCCTGCTCGTTACCCAGGATGCTCCGGGACACGTAATCTCCATGACAACCTGTCAGACCTGAGAGCTCAGGTGGCGGCCAATCAGAGAGGGAGTCAGCTGGTGGGGGAGCTGATCGACACCTACGGACTGGATGTAGTGCAGGCGTACATGGGCTacattcagagtaatGCAGAACTGGCGGTCAGAGACATGCTGAGAGACTTTGCGAGTCGACGGCGTGAGCAGAGCGGCTCGTTAGACGTGGAAGCTGAAGATCAGATGGACGACGGAACACCGATTAAACTTAGAGTGCAGATAAATGAACAGGAGggtagTGCTGTGTTTGATTTCTCAGGTACGGGTCCGGAGGTGTGGGGAAACTGTAACGCTCCTCGTGCCATCACTCTCTCCGCTCTCATTTACTGCCTTCGCTGCATGGTGGGACAGAACATCCCTCtcaaccagGGCTGTCTGACCCCCGTCAAAGTGACGATCCCCACCGGCTCCATCCTGCAGCCTTCCCAGAATGCCGCAGTGGTCGGAGGAAATGTGCTGACATCACAGCGAGTAGTGGACGTCATCTTCCGAGCGTTCGAAGTGTGTGCTGCGTCACAGGGCTGCATGAACAACATCACGTTCGGCAATGAGAAGTGTGGCTACTATGAAACGGTCGGGGGCGGGGCGGGGGCGGGGCCGGACTGGAACGGGCGGAGCGGAGTCcacagtcacatgaccaacACGCGCATCACAGACCCCGAGATTCTGGAGAAGAGgtatcCGGTGGTGTTGGAGCAGTTCTCTCTGCGGGCCGGATCTGGAGGTGGAGGTCGGTATCATGGTGGTGATGGTTTGATCCGGAAGCTTCTCTTCAGAGATGAAGTGATTCTGTCAGTGCTGACGGAGAGACGCTCGACACGGCCGTACGGTCTGCACGgaggaCAGAGTGGAACAGCTGGACTGAATCTGCTACAGCGAGCTGATGGACGAGTGTTAAACCTGGGAGCAAAGACCTCAGTCAGCCTCCAGCCTGGGGACAGGTTTGTTCTCCACACCCCCGGAGGAGGAGGTTACGgtacagaggaggaggaggaggaagaggaggaggagaagcagcACTCATCCTCTAAGCGGCGCTGTTTAACCCGAGTGTTCGccgagagagggagtgtgtacGAGTATCGCCGAGCTCAGGAGAGCGTCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224183 lncRNA downstream 946 1887584 ~ 1887870 (-) True G189381
TU224152 lncRNA downstream 62345 1825035 ~ 1826471 (-) False ppp1r16a
TU224153 lncRNA downstream 62345 1825144 ~ 1826471 (-) False ppp1r16a
TU224154 lncRNA downstream 63868 1824282 ~ 1824948 (-) True G189354
TU224139 lncRNA downstream 119121 1766732 ~ 1769695 (-) False LOC113534879
TU224188 lncRNA upstream 866 1904862 ~ 1906435 (-) True G189385
TU224190 lncRNA upstream 15474 1919470 ~ 1923367 (-) True G189386
TU224192 lncRNA upstream 20030 1924026 ~ 1925701 (-) True G189388
TU224194 lncRNA upstream 20030 1924026 ~ 1925701 (-) False G189388
TU224220 lncRNA upstream 83339 1987335 ~ 1988231 (-) True G189411
XM_026928116.2 mRNA downstream 18823 1825038 ~ 1869993 (-) True ppp1r16a
XM_026928278.2 mRNA downstream 66002 1812567 ~ 1822814 (-) False si:ch211-217a12.1
XM_034309397.1 mRNA downstream 66002 1812567 ~ 1822814 (-) False si:ch211-217a12.1
XM_026928277.2 mRNA downstream 68421 1812567 ~ 1820395 (-) True si:ch211-217a12.1
XM_034309394.1 mRNA downstream 84702 1776804 ~ 1804114 (-) False LOC113535291
XM_026928444.2 mRNA upstream 37700 1941696 ~ 1982877 (-) True kcnh4b
XM_026928582.2 mRNA upstream 148788 2052784 ~ 2078967 (-) False LOC113535332
XM_026928580.2 mRNA upstream 148788 2052784 ~ 2078967 (-) False LOC113535332
XM_026928581.2 mRNA upstream 148788 2052784 ~ 2067311 (-) True LOC113535332
XM_034309384.1 mRNA upstream 148788 2052784 ~ 2064864 (-) False LOC113535332
TU223956 other downstream 317743 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 323556 1564890 ~ 1565260 (-) True G189180
XR_003404831.2 other upstream 290991 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 889050 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 896080 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 948059 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2994778 4898774 ~ 4898845 (-) True trnap-cgg_2

Expression Profile