RNA id: XM_034309387.1


Basic Information

Item Value
RNA id XM_034309387.1
length 2404
RNA type mRNA
GC content 0.52
exon number 10
gene id ghdc
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1926399 ~ 1935741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGAAGACGTAAAAGAGCTactaaagaaaatataaactgTAGATAGAActtactaaagaaaaaaatacaaagattttgaatataaaaagtgtaaaacacaGAGAGCTGCTGTAGTGCCGTCGCCGAAATGACGTCACGACGCCGTTGCGTCAAACCCGGAAGTGTAAATAAGGAAGAGAGGATGTTTTTGTCGCTAAACTCGATGTGGTGTTTTAATTGcggtaattaattaatgaatgaatgagttttaCAGTaactttacagccatggtgtgTTTGTCTCGCAGTGTTTGTGTAATGTGTCTTCTCGGGTGTGGTGTAATGGCGGCGCTAACAGCACGAGCGCTTTTAACCGGAATGGCGCATGACGTGTTCCTGGCTCTCTGCGCCGTAGCTCTGAGCGTCGCCGTCGCGCTCTGGGGCGTGTGTGTGACGGGAGGCAGGCGCAGTGTGTTCAGCGTCGTGCGTCACTACCTGTCCGTTAGGTGCGTGAGTCGAGCGGGGAGACGGCAGAGAGACGCGCTGGAGAGAGACACGCTGTGTGTACGGAGAGTGCAGGAGGAGACGCTGCTCAGACGGCTGAGAGACGcgaaacacacacaatatggaCTCCAGTATCAATTCAGTTCTATCACagACGCAACGGATTTCCGAAAGCGTCATCCCGTCGCCACATACGATCATTACGAGGAGCTCATACGGCGAGTCGCCTCCGGAGAGGAAAAGGCCGTTGTCATGGAGACGCCCATCCTAACGATGACCTCAGGGTCATCAGGATGCAGCAAGATGCTCCTGATCACCAAAGAAACCAACAGTGACTACTTCTTACAGggcgtgtcagtgtgtgtagatgtCATGAGGAAAGCTTTCCCGGGTATAACGAGTCTCCAGACGACCTTCAGACTGTTTTACCCATCGGCTGAACGTTACTCTGAGGCAGGACTTCGAATCGTTGCGACGCCGTTTTATtccgaacacacacaccacctctgcaCGAGTCCCACCGCCATCTTACAGGTGCAGAATGAGCGTGATGCTCTGTACCTTCACCTGCTCTTCGCCCTGAGGGATCGTCATGTCGGCACCCTGGAGTCCAGGTTCTCATCCGCGCTGTTGGACGCCTTCAGACTCCTGGAGGAGCATTGGGAGGAGCTGGTTGATGACGTGGAATCGGGTCGGATCAGCTCCAGGCTTCTTCTGGATGCTCAGCTCAGGTCGGAGCTGGAAAAGCGAACGAAGCCGGATCCTGTCAGAGGCGCAGAACTCAGGACTGCCATCGCCGAGGGCTTCGAAGGCGTCGCTCTCAGACTGTGGCCTCGTCTACACCTGATTCACACCGTCGACTCAGGGCCACATCAGATTTATGGAGAGAGTCTCAGACAGCACTACTGCAAGGGCGTGCCCTTCTATTCTCCGCTCTACGCCGCCTCAGAAGGTCTGATCGGAGTGAATCTTTGGCCGCTCCAGGACAGGAGACGTTACCTGCTCTGTCTTCGCTCCATGTTCTTCGAGTTTCTACCAGAGGAACATTTAgacgcacaacacacactcagcacactCGACACACTGCTCATGGACGAGGTGGAAGAGGGGAAGAACTACGAGCCGATCGTCACCAACGCCTCGGGACTGTTCAGgtaTCGCCTTGGAGACGTAGTGAAAGTGGTCGGGTTTCACAACCAGTGTCCGGTGGTGGAGTTTCTTTACAGaccCAGTCAGACGCTAAACGTTCGAGGTGAAAAAGTGAACGAGGCCTTGTTTTTAGCCGCTCTAAAGAAAGCGGTGACACAGTGGCCCGGCGCTAAACTGGTGGattactgctgtgctgagagTGGAATTCTGGGAGACTCGTCAGGAGGAGCTCAGCCTCATTACCAGGTCTTCGTGGAGCTGCGAGGTGTCAGGAACCTCACCGAGGAGCAGCGGTATAAGttggacGTGTGTCTGCAGGCCGACTGCGCCGTCTACAGGTCGTTCCGGATCAAAGGCAGCATCGGACCAATGAGAGTGCAGCTCGTTAGTGAGGGGGCGTTCCGAGAGCTGAAGAGTCACATGATCTCCTTCTGTCACACCTCCACCAACACGTTTCAGATGCAGCGCGTCATCCGCAGGAAGGAGAACGCCGACTTCCTGCTGAGGAAAACTGTTTCCTGATACGCAGCATGGCATCCTGGGAGAGATGGAGTACACACTCGGACTGACAcacaatgtaaacacacaatCCCACTGTATATAAGAAACGGCGCCGCAATGCTTTCTGGGTAAATTGTGCTCCTGATGTCACTCTACAGTGATGTCACTGATGAAACAGGGTGAGAGGGCAAGGGTACAGAGATTACGGATTTAATAAACAGTTTACGGAAATGCTTATAATTCGACTGCTACAgcgtttgtaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579220.1 lncRNA upstream 702 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA upstream 727 1924023 ~ 1925679 (+) False LOC117598584
TU224082 lncRNA upstream 38536 1887650 ~ 1887870 (+) True G189293
TU224061 lncRNA upstream 62754 1863202 ~ 1863652 (+) True G189280
TU224019 lncRNA upstream 149974 1775605 ~ 1776432 (+) True G189245
TU224099 lncRNA downstream 4211 1939952 ~ 1940256 (+) False LOC117598558
TU224296 lncRNA downstream 207411 2143152 ~ 2145756 (+) True G189477
TU224386 lncRNA downstream 359345 2295086 ~ 2295305 (+) True G189555
TU224394 lncRNA downstream 372485 2308226 ~ 2309418 (+) True G189563
TU224401 lncRNA downstream 381577 2317318 ~ 2318307 (+) True G189570
XM_026928621.2 mRNA upstream 6986 1905208 ~ 1919420 (+) True stat5b
XM_026928622.2 mRNA upstream 6986 1905208 ~ 1919420 (+) False stat5b
XM_034309398.1 mRNA upstream 43428 1875654 ~ 1882978 (+) False foxh1
XM_026928452.2 mRNA upstream 43428 1875655 ~ 1882978 (+) True foxh1
XM_026928118.2 mRNA upstream 75212 1847621 ~ 1851194 (+) False LOC113535036
XM_034309350.1 mRNA downstream 1946 1937687 ~ 1952224 (+) True LOC117598558
XM_026928572.2 mRNA downstream 50779 1986520 ~ 1991390 (+) True LOC113535328
XM_034309401.1 mRNA downstream 56676 1992417 ~ 2049358 (+) True drosha
XM_026928609.2 mRNA downstream 168584 2104325 ~ 2117109 (+) True LOC113535349
XM_026928136.2 mRNA downstream 199438 2135179 ~ 2142952 (+) True kbtbd2
TU223925 other upstream 261069 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 1706038 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 824952 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1034384 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1034384 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1302703 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1465526 3401267 ~ 3405009 (+) True G190212

Expression Profile