RNA id: XM_034309390.1


Basic Information

Item Value
RNA id XM_034309390.1
length 3837
RNA type mRNA
GC content 0.49
exon number 16
gene id avl9
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2147896 ~ 2162573 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaGCACTGTGAATGAGTCAGCAGTGACGTCATGGTCACGAGGGCGGAAGCGGAAGTTgcctctgtttgtgtttgtccatCGGTAGCAAATCGATGAGGCGAGCAGAAGCGtcggtttttattattttaatcgcGAGTAAAAGTTAGCttttgtctctcacacacaccgtgaTGGAGTCCGGCGGTAAGGACGAGGTTAAAGGAGCCGTGCTGCACATCGTGGTGGTCGGCTTCCACCACAAGAGGGGCTGCCAGgtggagtTCTCGTACCCCCCCATCAGTGATGAAGGTCATGACAGTAACTCGTTGCCTGATCAGTGGAAGTACCTGCCGTTCCTCGCTCTGCCCGACGGAGCGCACAACTATCAGGAGGACACGGTGTTTTTCCTCCTGCCCCCTCTGAGTGAggagatgaagtgtgtgtacgGCGTTTCCTGCTACAGACAGATTGAAGCCAAGATGCTGAAGGTGAGACAGGCTGATGTCACCAGGGAGACGGtgcagaagagtgtgtgtgtgctcagcagAGTGCCGGTGTTCGGTCTGATTGCGGCGAAGCTACAGCTCATCACACATGCCTACTTTGAGGAGAAGGACTTCTCTCAGATCTCCATCCTGAAGgagctgtATGATCATATGAACGGGTCTCTACGGTTCCCAACGCTGGAGGGATCACAGGTGTATCTGGgtttaTCTGCACGAGATTTAATACTGCACTTTAAACACAAGGTTCTGGTTCTGTTCAAGTTGATTCTGCTGGAGAAGAaggtgctgtTCTATGTCTCTCCTGTTAACAGATTGGTGGGGACCCTGATGACGGTTCTCTCACTGTTCcctgGTATGATCGAGCGTGGCCTGTGTGACTCCTCTCACTATCATCCTaaaagcagccaatcagagagtgCTGACATCATCAAGAGTGTAGACCTCACAGGGAACACCGAAGTGTTTGTCGCTGAGCCCACAGTCAACCAATCAGAGGGCTCCACCGGTGCTAAGGTGAATCCGAgctctcctgattggctggataACGAGTGGGAGAGTCTGGACCCGAGCgtgctggaggaggaggaggagaaggagggagaCGGAGGAAGACGTGCACAGACGGAGTGTGTAGAGGCAGAGTCGAACACGCCCATCACTGTTCAGCCCAAAGCCACACCTGCtcagaccaccacacacacacagagtgacacacccacacagagtacacacccacacacacccctgctgGAGGAGGACCAGTGCGGCCTGCCGCCCGCCATCTTCACCAAGggttacCTGTGTTTACCCTACATGGCTCTTCAGCAGCATCACCTGCTCTGTGATGTCAGAGTTCGGGGGTTCGTTGCCGGAGCAACCAACATCCTGTTCCGTCAGCAGAGACACCTGAGTGACGCCATCGTAGacgTAGAGGAGGCCGCGATCCACATCGCCGACCCAGAGTTACGGCGTGTCCTCAATCTGACCACAGCTGACCTGCGTTTCTGCGACTTCctgttgaagagtgtgtgtgagcacagcGAGGACGTGTTTCTGGACGGGACCGGCTGGGAGGGAGGAGACGAATGGATCCGGGCTCAGTTCGCACTCTACATGCACACACTATTAGCGTCCACACTACAGCAAGACAACGAGAAGCTGCTGGCAGATTACGGCTCTGCGTTCGTCTCCGCCTGGAGGATCACACACAACTACAGAGTGTGGTCCAGCACACACCACCCGGCCATCACCGACATCACACCGGGTCACCCGTTCCAGGGTCAGTACAGCGTGGCGGACGTGAAGCTGCGTTTCTCACACTCGGTACAGAACAGCGAAAGAGGGCGGAGACTGGGCAGCGCAGTCATGAGCACCAGCAGGAGTGTGGTGCAAACCGGCAGAGCTgtcAGTCTGTGGGTGGAGCCTTGAACAGCGCCAAGTCGGTGATGTCATCGTGGTTCTCAACACTTTCTCCGCCAGCGTTAATATCGAACCCACAGTCTACAACGACCAAGCAGTGACTGcctctctcctcacacacacacacacacacacactccgtcaTCCTTCCATGTACTCTTAGATCTAACACACTACTGTTCCAGTGTACCGCGTCCTACTGGTGTGTCTTTactgtctgaccaatcagcatttAGCGCTGCCTCACCCTGATCTGAGTGTGTTTACCTGAAATCAGCGGCCTTAACGTCTGTCAGCGTGAGTTCGGGATGGACTTAATATgtcaaatacatatatatatatatatatatatatatataaattatataaaaatatatatcgtTGTAATTCTCCTGTCCAGTGTGcgcagtctgtctgtctgtctgtctgtctgtctgtctgtatgctGTTATATGCGGATGCATCAGTACCTTTTATTTCAGACCAAGTATGAGTATGAGTGCAGGTTTTTCGGTACTCGTCGATTCCGATACTGATCATAAAACGAGTAACGTACTTATTATAGTATTAATCTGTCAAAGACGtcaaagaacatttaatttaactgtgtttattctcctcatgctgagttttatggtTAAGATGTTGTGATGTTTAAACGGTATCTTTAATAGACAGCGCAGTCCTCGGGTCAGAGGTCGGAGGTCCTCGCACGCTCTATCAAGGAATACTGTTTAAACGGTTTCACCAGGCGGCTTGAAATGCATCCTTAGTGCAACAACCTACACTAGACTTAACGTCCCACAGTGTCACATGGTCTCGGATGTCGGTATTGGAGCATTTTTACGAGTAGgagtaaatgagcacagtgTCGGACCGATACCTGATACCAATATCTGTATCGATGCATCCAttttctgttcctttctttctttcactccaTCTATCATGGCTGTCTGTCTGGAGTCAAAATCTGGTGTCAAATTTGTCCAATCAGAAATGCTGCATATATTAAGATAAcagaataatatattaaattatattcacaaaagaaataaatacatgaactGATATATCTAGCAGATTAGTAGTCGCAACACCTGTAACAGGAAGTGATGATTAATCCCGTGCATTGATCAACTTTGTCAGTAAGCTGTCCGCGTCACTAGTGTTAGCTTTCTccctcacacactacagacattAAACCCCTGAGATAGACTCGCTGTCATGCGGCTGATTTACAGTGTGTTTCGTTGGAATAAAGGTGTGGAGCGTGCACGAGTGGAAGCTCCCGTCACTACACCACTTTCCGGCGTCCCAGAATCTCCAAATCACTCACAGAAGTGCGTTCTTCGAAGTGCCCTCTCTTCACGCTGTAGCGTACAGGGCCTGCTTACGTAGCCGCAGTGTAACGACTGCTAGCATGTAGCTTGGCATGTGAGTGGGCCATTAGCCATGAGATTTaactgttcatttaaaaatggtCCAAGGGTGGAGCTTAAGTCAAAtctgatcatgtgacatcaccactAGGAGTTCACTAACCAGTTACCGTAGCCCTGCGCTAATGTTATCTACCGTTAATGTGCTGTGTAGCTGTTCTGcgtcctgattggctgctccaGCGCAAGTCGAGCTCCACCACTGTTGACCCTGGGACGCCCTGATCGTGATCTGGGACTGTTGGGTTTCATCCTTCTGATCTGTTTACTTGATTTTTACGATGTACATCCACATGCTCCATCCGCTTAGCTgtacaatttgtttttaaagagtGGTTTCATTtgtttagaggttttttttttttaattgtttgagTGGATTTTGCCgtgtctttgtttttattttcaatttcagCATTGTTTTACATGTTCCTTTGATGCACCTTcagttattttagtttttagtcTTAATAAATTGGAAAGAATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224296 lncRNA upstream 2140 2143152 ~ 2145756 (+) True G189477
TU224099 lncRNA upstream 207640 1939952 ~ 1940256 (+) False LOC117598558
XR_004579220.1 lncRNA upstream 222192 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA upstream 222217 1924023 ~ 1925679 (+) False LOC117598584
TU224082 lncRNA upstream 260026 1887650 ~ 1887870 (+) True G189293
TU224386 lncRNA downstream 132513 2295086 ~ 2295305 (+) True G189555
TU224394 lncRNA downstream 145653 2308226 ~ 2309418 (+) True G189563
TU224401 lncRNA downstream 154745 2317318 ~ 2318307 (+) True G189570
TU224528 lncRNA downstream 362483 2525056 ~ 2528820 (+) True pyyb
TU224489 lncRNA downstream 428665 2591238 ~ 2609497 (+) True G189626
XM_026928136.2 mRNA upstream 4944 2135179 ~ 2142952 (+) True kbtbd2
XM_026928137.2 mRNA upstream 4944 2135179 ~ 2142952 (+) False kbtbd2
XM_026928609.2 mRNA upstream 30787 2104325 ~ 2117109 (+) True LOC113535349
XM_034309401.1 mRNA upstream 98538 1992417 ~ 2049358 (+) True drosha
XM_026928572.2 mRNA upstream 156506 1986520 ~ 1991390 (+) True LOC113535328
XM_034309402.1 mRNA downstream 601 2163174 ~ 2165781 (+) True lsm5
XM_026947887.2 mRNA downstream 10966 2173539 ~ 2184198 (+) True irf9
XM_034309182.1 mRNA downstream 108059 2270632 ~ 2287054 (+) False lrrc3ca
XM_026947884.2 mRNA downstream 117937 2280510 ~ 2287054 (+) True lrrc3ca
XM_026947886.2 mRNA downstream 120735 2283308 ~ 2287054 (+) False lrrc3ca
TU223925 other upstream 482559 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 1927528 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 598120 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 807552 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 807552 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1075871 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1238694 3401267 ~ 3405009 (+) True G190212

Expression Profile