RNA id: XM_034309392.1


Basic Information

Item Value
RNA id XM_034309392.1
length 2098
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC113535291
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1776804 ~ 1804114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGGATCACCGGCTGGGACAGGACGGACTTTTCACTAAcggcgacacacacacacacacacacacacacacacacacacagttttgacTGAATGGTGTGCGATTAAATACTCTAAATGTCCTGTCAGGAAGAGAAAACGGACTGCTCGAGCCAAACCGGTATGAGTGGTCTGTTGGGTGCGGCGTGTGAGGCGTCAGAGGTGAAACGGAAGCGAAAGCAGCGAACTCTAACGCTGTGTGACGTGTGTAATATTCAGCTGAACTCCAGCGCTCAGGCTCAGATCCACTACAACGGCAAAACTCACCAGCGCCGACTACGGCAAGCCAACAGGGCCAAAACCAGCAGCGGAGCCAGAAGCAGCACAGTGATGGGGATAAATGAGATATCGAGCAGCTCATGCGAAAGAGAGGAAAGAGCAATAATTCCAGATAATAATtcagagacgagagagagagagagagagagagagagagagaaagGAAGTCCAGCCCAGGGAGGTGCTTTgctgacatcacttcctgttcagcCCCAGATGGACCTGAAGCACTTTCTGCCTCTGAGAGTAAACAGCTCGTCGCACCTCGGCCTCTTCTCCAACTTtaacgtgatGGATCCTGTTCAGAAGGCGGTTATAAGCCACACTTTCAGCATCGCACAAGcgctgaagaaaaaacaaatcatcACCTGCAATATCTGTCACCTGCGCTTCAACTCAACAAACCAAGCGGAAGCGCACTACAAAGGGCACAAGCATGCACGCAAACTCAAAGCCATAGACAAGCTGAAGAACAAGCAAAGGATTCTGGGAAAGTCTGcgtggagggagagagagagaaagaaactaaTAAAAGGAGAGATGGAGGACAGCAAGGGGAAGGACGGCAGCCTGTCAgagaggacagCACCAATCTGTTCATCACAGGCATCAAACCCAGAAGACGAACGTGTTCAGGGGATCTCAGTCACGCTAACGCCCGTTTCACACACTTCTGCCTCAAAAAGGCTGTGTGAGAGCAAGTGTATCCCAGAATCCCCTGCTCCGGTGCCTCCAGCCGACCCGAAACGCTTGTGCGACTCTGAACCCGTAGTAAAGGGATACAGAAACCGGAGGAAATGCAGCAAGAGTCTTCACTGTCCTGTTTGTAAAGTGACCGTCAACTCTGGCTCGCAGCTTGAGGATCATTATAAAGGCTCTAAACACAGACTGATGCTCGGGGGTCGCTGCACGTTGCCACGAAAACGGGGCGGGAAAGTGGATTCATCCCGCGACAAGCCCCGCCCTAAACGGCCGTCCATCAACTCCGCCTCCACCGACCAATCACATCACTGCAATGTGTGTGATATAGACGTCAACTCAGAAGCTCAGCTTCAGCaacacATGCGCAGCAGGAGACACCGAGACCGAGCGACTGGAAAATCACATAAAACAAAGTTCAGCCCGTACATCAACAACTCAGCCCACGCAGTGTTACCGACCAAGCTCACACACCAGAAGGAACTCTCCAGAACGTTGACCTCCAGCTTCCTAACGTCGGCTCTCACCCCCGCCACCCTGTGCGCCATGGCAACCGGGCCTTTGTCTCTAAGCCACGTTCATCCGCCAGCCGCCATAATCCACGCCCCTCTGTTTAGCCCCACCCTCTTTAGACCCGCCCCCACCCTGAGGGCGGCTCACGGTCCAATCGTCTTCTCTCCTTACTAAAGAGACGGacattttcagacatttcacAGGAAGCTGCTCAGGAACAGAAATACGCAGAAACACAGATTACGCTGCGggatgtttaatatttacttctaaatacaaaacatttaataaaaaaaaaaaaaattctggaaataaaaaagaattactgttactgtcAAGCACTCGTTTGGGATTCTCTCTGTAGCGTTTCTGCTCGAGtctaaatacaataaataaaaaattaggaCGTTTTTAGAAGAATGTAAAgcaaatattacagaaaaatagaaaatatatacaatatataaaattttaaaattattttaaaataataaagaacaatTAAGGAAATTTTTTGTggaatatttatagaaaaagtAAAGTTTTAACAGCAAATCTATGAAGgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224139 lncRNA downstream 7109 1766732 ~ 1769695 (-) False LOC113534879
TU224004 lncRNA downstream 69098 1707364 ~ 1707706 (-) True G189233
XR_004579218.1 lncRNA downstream 75371 1701050 ~ 1701433 (-) True LOC117598583
TU223957 lncRNA downstream 174555 1600442 ~ 1602249 (-) True G189200
TU223969 lncRNA downstream 188204 1586131 ~ 1588600 (-) True G189206
TU224154 lncRNA upstream 20168 1824282 ~ 1824948 (-) True G189354
TU224152 lncRNA upstream 20921 1825035 ~ 1826471 (-) False ppp1r16a
TU224153 lncRNA upstream 21030 1825144 ~ 1826471 (-) False ppp1r16a
TU224183 lncRNA upstream 83470 1887584 ~ 1887870 (-) True G189381
TU224188 lncRNA upstream 100748 1904862 ~ 1906435 (-) True G189385
XM_026927851.2 mRNA downstream 3284 1760834 ~ 1773520 (-) True LOC113534879
XM_026927853.2 mRNA downstream 3287 1760834 ~ 1773517 (-) False LOC113534879
XM_026927852.2 mRNA downstream 4391 1760834 ~ 1772413 (-) False LOC113534879
XM_026927855.2 mRNA downstream 9255 1760834 ~ 1767549 (-) False LOC113534879
XM_034309198.1 mRNA downstream 126257 1622680 ~ 1650547 (-) True LOC117598490
XM_026928278.2 mRNA upstream 8453 1812567 ~ 1822814 (-) False si:ch211-217a12.1
XM_034309397.1 mRNA upstream 8453 1812567 ~ 1822814 (-) False si:ch211-217a12.1
XM_026928277.2 mRNA upstream 8453 1812567 ~ 1820395 (-) True si:ch211-217a12.1
XM_026928116.2 mRNA upstream 20924 1825038 ~ 1869993 (-) True ppp1r16a
XM_034309383.1 mRNA upstream 84702 1888816 ~ 1903996 (-) False oplah
TU223956 other downstream 205731 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 211544 1564890 ~ 1565260 (-) True G189180
XR_003404831.2 other upstream 390873 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 988932 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 995962 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 1047941 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 3094660 4898774 ~ 4898845 (-) True trnap-cgg_2