RNA id: XM_034309401.1


Basic Information

Item Value
RNA id XM_034309401.1
length 4568
RNA type mRNA
GC content 0.54
exon number 32
gene id drosha
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1992417 ~ 2049358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGGAGGGTGTAGAGGTGTTATTTTGCGCCCTGTCTAGGGCACCTATCGAGGGAATAGGGAGTGATTTGAGATGCGGATTTTGCTTTCGCGAGGACTTGTAGGAAACCGGATGCTCTGTAAGAGCTAACTGTTATcgctgtatttatatataaaatagttacATGAATCTGtatgtaaaaaattatattacacaGTTTGTGCTCGTGCTGCTTCCGGTTCCACATCGATGAGGTTTGGTCCTGCTAGCACATTTAGCTTGATTAGCGGCTAGCGCGCGCAGAAGATGTCCTTTCATCCTGGACGTGGATGCCCACGAGGGCGCCCTCCCCCTCAGAATTACCCCCCTGTCCCCCTGCGTTTGCCCCCTCCTCAGTCCCTCGCGCCCTCCGTGCCCCCTCCCTACCCCTATGACCCCTCGACGCCCCACTGTTCCACCTACAGCCCTCAGTGCACCAACACCTACATGCCCAACATGCCGCCTCGTCCCGAATTCCCTCCCTACCCTGTCCCAGCGTCCTCCCAGGGCCCGCAGTGCCCCTTGCGCCCTCCTTTCCCACCCCCGCCTCTGCACCAGGGCTTCCCAGAACCCCCTAATTTCCCCCCGCCCCCTTTACCTGTCCCTGCAGGTGGCCCTGCCCCCTCTCAGGGCTCGTATCCTTACGtcccgcctcctcctcctccaccctcGATGCCTCCTTCTGTACCCTTTCAGCCTCCCTACTCCATGAATTACCCCCCTCAGCCCCACTTACCCCCTCTACCTCCTAATTTCTACCCCCCCTCCGAATCCGGTTCCTTCAAGCCCATGGAGCATTTCCATCACTTCAAGACTGACAAGTCGCCCGAACGGCCACGGCGCCACAAAAGCTACGGGTACGGTGGGTACAGTGGGCACGGAGAGCGGCGGGAGCGAGGGCGGAGTCCGGACAGGAGACGACAGGAAGGAGGGCGGTACCGGTCGGAGAACGAGAGGGGCAGGACCCCCCCGAGACACCGGAGCCGAGAGCGCAGCAGGGAGCGCTACCGTCACCGGGACAGCAGAAGCTCTCCTCCATCGGACCGCCACAGGAAACGAGCCCGCAGCCGCTCaggaagcagagagagaaaacgtgGACGAATGGAGGAGGAccgggagagggagagagaaagagaaagggacagggaaagagaaagagagcgagagagggagaggagggtgGAGGCAGCAGgaggaaacagagaaagaagctacagagagacagaggatgaggaggaggaagagttaCTGAAGCCGGCGTGGATCCGCTGCACTCACGCTGAGAACTACTACTCCAACGACCCCATGGACCAAGTGGGCGACTCGACAGTAGTGGGAACGAGTAAACTGAGGGACCTGTACGAGCGCTTTGAGGAGGAGCTCGGACGACGACAGGAGCGCGCCAAATCCTCCCGCCCCAAGTGGGAACCACCCAAAACCAAACTGGACCTGGACCATGacgAGAGCTCGAGTGACTCGGAGTGTGACTCGGATGGGGACAGCAGTTGCTCCAGCAGCTCCGACTCTGAGGTGTTTGACGTGATCGCAGAGATCAAGCGTAAGAAAGCGCACCCCGACCGGCTGCACGACGAGCTGTGGTACAACGACCCGGGACAGATGAGCGACGGTCCGCTAAGCCAGAGCAGCAGCACAGGAATCCGGCACAGTATTTACCCCGGGGAAGAGACGGTGAAGCCGTGTCGTCCAATGAGCAACAACGCCGGCAAACTCTTCCATTACCGAATCACCGTGTCTCCGCCCACCAACTTCCTGGTGAGTCGACCGACGGTGATCGAGTACGATGATCACGAGTACCTGTTTGAAGGATTTTCTctcttctcacacactcctctcactaACATCCCGTTGTGCAGAGTGATTCGCTTCAACATTGATTACACCATCCACTTCATAGAGGAGATGGCACCTGAGaactaCTGTGTTAAAGGTCTGGAGCTTTTCTCGTCGTACCTCTTCCAAGACATCCTGGAGCTGTACGACTGGAACCTCACAGGTCCAGAGGAAATGGAGTCTCCCGCCTGCCAGAGGTTTCACTTCATGCCTCGCTTCGTGCGATTCCTACCAGacggAGGTAAAGAGGTGCTGTCTATGCACCAGGTTCTGCTGTATCTGTTGTGCAGTAATAAACCTCTGGTTCCGGAGGAAGAGATCGCCAACATGCTACAGTGGGAGGAGCTCGAGTGGCAGAAATACGCAGAGGAGTGTAAAGGAATGATCGTCACGAACCCCGGCATgaaACCCAGCTCGGTGAGGATAGACCAGTTGGATCGGGAACAGTTTAACCAGAACGTCATCACGTTCCCAATCATCGTCCATTTTGGAATCCGTCCGGCTCAGCTCAGCTACGCCGGAGACcctcaATATCAGAAACTGTGGAAAAGCTACGTGAAGCTGCGCCACCTGCTGGCTAACAGCCCCAAAGTGAAGCAGATCGACAAGCAGAAgctcacacagagagaggaaGCTCTGCAAAAGATCAGGCAGAAGAACACGATGAGGAGGGAAGTGACGGTGGAACTCAGCAGCCAAGGCTTCTGGAAAACCGGGATACGATCCGACGTGTGCCAGcacgCGATGATGCTCCCGGTTCTGACCCACCACATTCGGTACCACCAGTGTCTGATGCACCTGGATAAGCTGATAGGTTACATGTTTAAAGAGCGATGCCTCCtgcagCTGGCCATGACTCACCCGAGTCATCACCTGAACTTCGGGATGAACCCCGATCACGCTCGTAACTCTCTGTCCAACTGCGGGATCCGTCAGCCCAAATACGGCGACAGGAAAGTCCATCACATGTACATGaggaaaaaagGAATTAACACGTTGATTAACATCATGTCCCGGCTGGGTCAGGACGACCCCACTCCTTCCAGGATTAATCATAACGAGCGTCTGGAGTTTCTCGGTGATGCTGTTGTTGAATTTCTAACcagCGTTCACCTGTACTACCTGTTCCCCAACCTGGAGGAAGGAGGATTAGCTACGTATCGCACTGCCATCGTCCAGAATCAGCACCTCGCCATGCTGGCTAAGAAACTGGAGCTGGACCGCTTCATGCTGTACGCTCACGGCCCGGATCTGTGCCGAGAGTCTGACCTCAGACACGCCATGGCTAACTGCTTCGAGGCTCTTATaggtgcTGTGTATCTGGAAGGTGGGTTAGAAGAGGCCAAGCAACTGTTTGGCAGGCTGCTGTTCaacagtgaggACATGAGGGAGGTGTGGCTCAACTATCCACCTCATCCACTCCAGgtgcaGGAGCcggtgacagacagacagctcaTCGAATCGTCTCCCGTCCTACAGAAGCTGACGGACTTCGAGTCGGCCATCGGAGTTTTCTTCACACACGTCCGTCTGCTCGCCCGAGCCTTCACACTGCGCACCGTCGGCTTCAACCACCTGACGCTaggtcATAATCAGAGGATGGAGTTTTTGGGAGATTCCATCATGCAGCTCGTAGCCACCGAGTATCTGTTCATCCATTTTCCCGACCATCACGAAGGCCAtctgacgctcctgCGCAGCTCGTTGGTGAATAACAGAACACAGGCAAAGGTGGCGGAGGAATTGGGGATGCAGGAATACGCAATAACGAACGACAAGACCAAAAGACCTGTCGCTCTGCGCACGAAAACACTAGCCGACCTGCtggaatctttcattGCAGCACTTTACATAGACAAAGACCTTGAATATGTTCACACGTTCATGAACGTCTGCTTCTTCCCGAGATTAAAGgagtttATCCTGAATCAGGACTGGAATGATCCAAAGTCTCAGCTCCAGCAGTGCTGCCTCACCCTGCGCACCGAGGGCAAGGAGCCCGACATCCCCCTCTACAAGACACTACAGACAGTCGGCCCGTCTCACGCTCGCACCTACACGGTCGCTGTGTACTTCAAAGGAGAGAGAATCGGCTGTGGGAAAGGACCAAGTATACAACAGGCTGAGATGGGAGCTGCCATGGACGCTCTGGAGAAATATAACTTCCCTCAGATGGCCCATCAGAAGCGCTTCATCGAGCGGAAGTACCGCCAGGAGCTGAaggagatgaggagagagagagagcggcaAGAGCGCGAGAGCGACGATGCCGAGGACGCTCGCAAGTAAAGAAGGACGGGGTATCGCACGATAACCGACAACGTTCAAGATCGACTTttccagcaacacacacacacacacacacacacacacacacacacacagtgtaataatCACTGTTCCTGCACATCTGAGGAGCGGAAGGAATGCACTTAGCTTCAGCAGCAAGCTAAAGTCAGAATGTAGCAGTGGTTTCTGGGTAAATGTGCTTCTGGAGTCTACAGAGATGTGGACTGCATCCCTTTTCTACAAGATGGCCGAAGGGAACACAGATGAAGTGGACTCTGCCGAATTGGGCGCAGCCTCCTGTCTTTTTTTGGTTCCTaccattattttaaattaaatatttgtgtttttttttataaacttaaTGCATCAATTATGAGACACAGCTATTATAAATAAACCCTACAAACGCA

Function

GO:

id name namespace
GO:0016075 rRNA catabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0004525 ribonuclease III activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03685 rnc, DROSHA, RNT1; ribonuclease III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224099 lncRNA upstream 52161 1939952 ~ 1940256 (+) False LOC117598558
XR_004579220.1 lncRNA upstream 66713 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA upstream 66738 1924023 ~ 1925679 (+) False LOC117598584
TU224082 lncRNA upstream 104547 1887650 ~ 1887870 (+) True G189293
TU224061 lncRNA upstream 128765 1863202 ~ 1863652 (+) True G189280
TU224296 lncRNA downstream 93794 2143152 ~ 2145756 (+) True G189477
TU224386 lncRNA downstream 245728 2295086 ~ 2295305 (+) True G189555
TU224394 lncRNA downstream 258868 2308226 ~ 2309418 (+) True G189563
TU224401 lncRNA downstream 267960 2317318 ~ 2318307 (+) True G189570
TU224528 lncRNA downstream 475698 2525056 ~ 2528820 (+) True pyyb
XM_026928572.2 mRNA upstream 1027 1986520 ~ 1991390 (+) True LOC113535328
XM_034309350.1 mRNA upstream 40193 1937687 ~ 1952224 (+) True LOC117598558
XM_034309387.1 mRNA upstream 56676 1926406 ~ 1935741 (+) True ghdc
XM_034309388.1 mRNA upstream 57515 1926399 ~ 1934902 (+) False ghdc
XM_026928621.2 mRNA upstream 72997 1905208 ~ 1919420 (+) True stat5b
XM_026928609.2 mRNA downstream 54967 2104325 ~ 2117109 (+) True LOC113535349
XM_026928136.2 mRNA downstream 85821 2135179 ~ 2142952 (+) True kbtbd2
XM_026928137.2 mRNA downstream 85821 2135179 ~ 2142952 (+) False kbtbd2
XM_034309389.1 mRNA downstream 98538 2147896 ~ 2162573 (+) True avl9
XM_034309390.1 mRNA downstream 98538 2147896 ~ 2162573 (+) False avl9
TU223925 other upstream 327080 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 1772049 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 711335 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 920767 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 920767 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1189086 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1351909 3401267 ~ 3405009 (+) True G190212

Expression Profile