RNA id: XM_034309418.1


Basic Information

Item Value
RNA id XM_034309418.1
length 9591
RNA type mRNA
GC content 0.51
exon number 46
gene id wu:fj29h11
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8791190 ~ 8834456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGATCAGCGTGTGATGTGTGCGGAGGATGCAGATGAGCTCGGTGCAGGCTGTGAGAGCAGCTTCAACGGAACAAAGCCGGCTGGAGGGTGAAGTTtagcacacagtgttttattacaaTGCTGGAAAACTGTCTGTTTGCGTTGATCTgcatgaggaaatgtttatttatttacctgaaTACACACAGTCCAACTTCCCCAGCCAGAGATCTTCAGGATTTCAGTCTATtaatccatcacacactccctgaACAATGAGGACTGTCCCAGAGCCTGTTCacagaaatgagagagaaagtgctGAGCTGCAGTTCACACTCACAGTAAGGGCTGTGAGAACAGCAGTGATCAGAAGCATTAGGATACAGACGCTTGGCATCTTCCTCTTCACATGGACGTGTGACTTCTTACCATGCAACAACATCAGATGAAGAAATGGTTAAAATCAGTAAGAAGGTCGTACGGCTCGTAGAAGGTCATCCTGAAGGAATCCCGCTCTCGGAGCTGGCTGTGTTCTACAGTCAGAAGTATCATCGTAACCTGAACGTGTCAGATGTTGGCTTCTCCAACATCGCTGGTTTCATTGCCTCTTTGACTGAGCACCTGGTGGTAGAGAATGGGACAGTTTTCCACAGGAAGCACGTACCCCAGACCCAGGATGCTGAAAAAGACGTCGCAGTGGCTCAAAGCTGCCCACAAGACAAGGACAGAACATCACAGGAAGTAGTGGAATTGGTTCAGGAGCACCCAGAAGGCATCCCTCTCAAGCAGCTAGCTGTGTTCTACAGAACTTGCTACAAGCGAAAGCTGGTTGTTTCAAACCTAGGCTTCACTTCAGTCACCGGTTTTGTCAATTCCCTGTCAAAGGATTTGCTAGTGGAAAATGGGACCATCTTCCACAAGATGCACAGAGTTACTCCTGGGCCACCAGAACCACTGAATGAAACCCCTCCCGCAGTAAAGACTAGCTCTGGAATATCCTTTGGTGCTGCGCCAAAGCGAAAGGAAGGTGAGATGACCCAAGAAGAGCTGCTTGAGAAGGTTAAGGAGGTTATCAGAGTCTACCCAGCTGCTGCAACCTCCATTACACAGCTGCTGAATGGCTACTTCCTGCATTTTGGGTCTATACTCCCACTGGGCCTGTACATGTCACTATACGACAGTCAGACCAGCACACAGCAGGCAACTTTTGGCCAAGCACAGGTTATTGCAGAACAGGAGACAGAAAGCCCTGCTACATCAGTAAAGATGCTCACGACGCCTACTGCAAGCCCACAGCGTGCTCCGGTGGCGCACCGGGTGACTGAAGAAGTGGTACGTTCCAAGAGCGGCTCTCCTGTGTGGCAGCTTGCTGCTACTCCACCGCCTGCAGATTCCAGTCTCATATCGTTGACTGACTTCCCAGCTCTCGGTACCAGACAATCCAGAGCTGGGGAGAGGAGAATGAGAGATGGCCAAGAGGGAAGCAACCTGGTGTTCCGTGATGCCCACCATGCCCAGCTGAGAGAAGTGCACGGAGATAACGTTCGTGCAGTAGAGGCCTTGGAGGCGGCGAACGAGAAGAGGGAGACTGTGGATCGGCGCAACAAGAGGCCGAGTCAAGACGAGGTGAACAGCCTCGCTGAGGATGCCATCCGAGACATCGCCACTGAGGGGGAACACGTCACATTGGAGAAGGTGATAAAAAAAGTGTGCATGCTTCTGCAAGTGCCGTCCTTGAATGCAGTGGGTGTCAGATCTTATTGGCAGCTGCCTGCTCTGAGGGAACTGGAGCGCACTGTTAAAGAGATCAACCTCTTCATTCAGTCGATAGAGGCGATCTGTTCCATGTGCACTCTCTATGAGCTGGGTCAGGCTATTGCTGGCATCAAAAACAAGAAGCGATTTGAAGAGCTCCACCTAGGCCCGCTCTGTAAAATCCCAATTGTTCATCGGCTGTTCACAATAAACAGCAACACCAAAGATGAAGATATACACCAGATCGAGACTGTGGATCTTCTTAGGAGTCTTCGTAACTTCAGGAGAAAGCAGAGCAAGCATAAGGTAGACCTTGCCGAGTTCATGCAGTACCTTGCAGACCAGTACAGCTGCAGTTCACCGTATGAACTTGGGGTCCGGATCCAGAGTGTTGGGCTGCCCATTTCGACACTGTCGAAGGCATATGCGTGTGAGAACGCTTGCTtggagagagccagagagaccATTCAGAAGGAGATTGAGGAGGAGGTAGAGACCAGGCTGTGGAAGATTAAAAAGAGTTTACTGGACCCGGCACAGGGAGCGCCGCTCTACTCCTCCACTGGCAGCCTGGAGCTCAGGAAGAAATACGCCAGCTTGACCGCTGCCGAGGCCGTCCTTGAGATCTTCACTAACTCTGCGGGCATCTTCAATCAAAGAATGACCAAGCGAGTTCAGGACTTCCTCATGTACGTGTCGGGAGACAGGCTGGCTCGGACCTTGTTTCAGCTGGCTATCTGCGGTGGCTCCCTGGCCATCCCAAATGACCTAGCTCCAAAGGAGAAACCCCAAAAACAAGTCCAGGAACAGAAAGCATCTGAGAAGAAGTCAACTGAGATGCCCCCTACTGAAGATGCTGTGAAGCAGTACTTCCAGGACTGTGTATCCAGAGTCATGGGCACAGTGACTCTGCCATATCTCAACCGGCTGGAGAAGAAAATGGCCGAGCATTTCAAGTTCAAGGAGTTTGGCCAGCTACATCAGGGTTCCTTCCTTGAGTTCCTggtcaaaaacatgcagATTCTACAGGATGCTGCAGGAGGCGCTGTGGCTATTGGCAACCAGGATGTTCGAGCGTACGGCTTCAGACCCAGCCAACAAGACGTGTATGAGTTTATTAAGCAATGCGGAGAAGCAGATCCTTCACAGCTGCCCTTTATCGAGGCTGCTCTCAGGAGTCACTACAGGGTTCATGACAGTCGAGAGCTTGGCTACGGAAAACTTCGCACACTGGCAGACTTCGCCAAGCGCCAGAAGGAGATGTGTGACGGGGCCAGTTCCAGTGTCGTGCGCTACGAATGCCCTCTGCTCCCTAAAGAACCAGAGGACATGCTGGTGGAGACGGTGGGCTTGCTGGGGGACGTGAGCCGGGAGCAGGCAGTGGCGAGTCTCCTCTCTGCTCCACTGCTGGAGGACTTGGCTGAGTGGAGCCAGTGGGAGCTGGTCTTTCAGCCCAATCATGGACCACTCAAACACTTCGTTGACAAATATTGCAGTAACACAGACCTGCTGGCTTTGGAGGTGTCTCCTGGAGTGCTGTTGAGGATCACCTCCATCACTGGTGATAAATTCTTCTCTGAAGCCGCCCAGGCCCTTGATCCTGCAGGCACCGCCGGTCACCTGGTGTCCATCGTGGTAGCTGATGGGATTTCAAACACTCCCACAGCACTGCTGGCCAATCACATGGAGAGTTCCCTAGCAGCAGCAGCTGCCAGAGAAGATCCATCCCTTGGCGAAGATGAATGCTCCTTCAGCACCCTGGCCAAGTTCGTGCTCGAGTGTGTAACTCGGATGCCTACAAGAATCTGCAGAGAGCTGCTGCAGCAGGTGTTTCTGGAGCCTCTCTCTCGAGTGCTTGGCCAGGCCAGGTCTAAAGCTGTCCTCCTGGAAGCAGCCAAGTCAGAGACAAGGTACCTCAACAAGCTCCATCAGCTGGGCATCCTGCTGGGCATCACTGAGTGGGTGAAGGACTTCCACACCAAGCTCATCTTACCCCCGACACCTGAGGTGCCCTCACAGAACCTGCTGGCTGACTCTATGAGCGATGTATCCTCTGTGTTGAGTCTGGCTGACGGTGAGGATTTGTTGGAAGAGTCTGTGCTCAGCTCTGTCTCCAGTTCCAAAGTCTCTCAGCAGGATATTAATGACAGCGCCAGGAACGGTGCCGAGGATGatgttgaggatgatgcagaCGATGAAGATCTCTTTGAACTGGCATCAGAGAAGAACGAGGAGGTTAACAGCAGTGTTGACAGtaaagaggaggatgaggaggctGAAGGTGTAGAAGATTCTCCTGAAGGACAGTCAGACGGGGACGACCCCGTTAGTGAGCAGCTCAGCCAGCAGAGGGCCATCGTGGAAGACATCAGGACAAATGAGTTTGGTGTGGGAGTGGAGCTGAATGAAGCGGGTCAGAACCTTATGAAGAAGCAGCAGGCGAGGCTCGGCCGCAGTCTTGAACGCCTCTCCACTGAACTCTACAGCAAAGACACACACTTCGTTCTGGAGCTCATTCAGAATGCTGACGATAACAGCTACCCACTAGACAGAAAGGAGGATCCTGCTTTGGCCTTCGTAGTGCAGAAAGACTGCATCACAATTCTGAACAACGAGTGTGGCTTTGAGGAGAAGAACGTGCGAGCTATCTGTGACGTGGGAAAGAGCACTAAGGGAAAACATACGTGTGGCTACATAGGCCAGAAAGGCATTGGctttaaatcagtttttaaaGTCACAGACTGTCCTGAGATCCACTCCAACGAATTCCATATCCAATTTGACAAGGCCAGTGGCCCCATGGGATACATCCTGCCTCACTGGGTGGAGGAGGAGAGGCCTGTGCCCTCTGTTGCCAAGGAGATAGCTgagaaaagCTGGACCACAAAGATCTTCCTGCCTCTTCGATCAGAGAGCTACCAGACCAAAAACCTTTTCCATGATGTGCACCCATCTCTCCTGCTCTTCCTCCACCGTCTCCGCTCCATCAGTATCTACAGTGAGGCTGAGAAGAAGGTGGTGTCCATGACGAGACGAGATCTGAGTCACAACATCCTGGAAGTGGAGCACACAGGTGGTGTGGAGCGCTGGCTAGTCGTCAAGAAGATGCTCCACCCTAAGAAtattaagGTGGACGTGGAATCTACAGAGCTAGCACTTGCCTTTCAGCTCACTAATGGCTCTGAGGGTGAAGTGAAGGTTCAGCCTCGGCAGCAGCCCGTCTTCGCCTTTCTGCCCCTGCGAAGCTTCGGCTTCCGCTTCATTGTCCAAGGAGATTTTGACATTCCTTCCTCTAGAGAGGATGTTGATAGAGACAGTTCCTGGAATCAGTGGCTCCGGTCTGAAATCCCCCAACTCTTCCTGCAAGCCATGGATGTTTTCAGTAGTCACCCCGAGTTTAGTGGGCTGCAGGGACTCTGCCACTTTTTGCAGTATATCCCCCAGCCTAGTGAAATCCTGGACTTTTTCAACCCTGTGGCCAAACAGATCATCCAGCTGCTGAAGGGGAAACCCTGCCTTCCAGCCAAGATGGACAGCAAAGGCAGAGTGGAGTTCAAGCTGCCTTCGCAGGTGGCTGTGTGCCAGGACCCTCTGTTCCAGGACGTGATCGGAGGAGAGGAGCTGTGTAAGCACCTGAACCTGTCATACCTTCACCCTGCACTGCagtcatcactgtcatcttcTCTGCTCACTGCTCTGGGTGTCCAGCGACTGAAGGCTTCTAACATCACCACCGTCATCTGTGCAATGGCCAAGAGTCTCGTACAGGAGGGTGATATTCACTCAGATGCCAGTCTGAAAAAGCTGGCCAAGCTGCTGGCATGTAATTTCCGTGCTCTGGAATCTGAGTACAACGAGGTGGATAGCCTGCTGCAGGCCCTCCGAGATGTTCCCATGATCCCTCTGGCAGACGGTCGTATGGTGGCTCTCAACGCAGAGGCTGTCTTCTTTCCTCTCAGTGAGGAGACTCACAGAGGCCTGGATGCTCTGTACAAGGACCTGAAAATAGTGGAGCCGCGGCTGCTGGCATGTCTGGATAAGTTGGGTAACTCTCAGGTGCGCGAGCTGCTCTGTAGGCTGCAGGTTCATGAGCTGGAGCCCAAAGAGGTGCTGCAGAAGCACATCTACCCCATACTGAAGAAAGCTGCTTGGAAGGAAAAGCCGATGGACATCACTATCAGCTACCTGATGTTTATCAAGGAGCATTCGCAGGAGCAAGACTACAGGGTGCTGAGGGAAGCTATCCCTGTACTCACAAACAAGGGTTTCCTCTGCCCCAGCCACAGCAAAGTGCAGTTCTCCAAAGAGTACGGCAACATCGACCTGCCCACCAAGCTGCCTGGTGTGGACTGGGTGCTGCTGGATTCATGCTACCTGCATGATGGAGATCTATCAGGATGGAGGGATTTCTTGAGTGACCTCGGAGTGAGGGATCTTCTCATTTTCAGGAAGGAGCGATGCACCCTCAGAGCCACAGAGCTGGCATCGAGCCCATGGGCAGCGGAGGCTGAGCTGTGGCCCAAAACTGCAGATAGACTGTATGTCATAGAGGATCAGCAGTGTGAAGAGCTCCACTCACTGATAACGGCAGATCAGCTTCCCACTGACATCAAAGTGCAGCAAAGACAAGCTCTGATCAACCTGCTGGAGAACAACTGGGACACTGGaGAGAAGTATGCTCAGTACCTCAGTGCTCAGGTGCTGGACAGTCAGGGCCGCACCCTAAGAGACACCAAGTCCTCGTTCTACTACCACCTCACCCAGTTGGCATGGGTGCCTGCCTACAAGCCCACACAGGATGGGAAACACATTGTGGAGTACTTGATTCCAAACAGGGTGTATCTCTTTTCTGACAAAGTGCACAGTCTCTTGGGATCCCACGTATGTTACGTAAACCTGGATCCCAGCGAATTCTCCAGAGCTGTAGGGATGAAACACACTGTTCTGGTGGATGAGATGGTCAGCTATCTGAAACGCTGGTGTACGAAGGAGTCTGATGGCGGCGAGGCTGAAGGAGCTGAATTCAACACCACCGTGAAGCACATCCACTCCGTGTACCGCTACTTGCAAGCAGAGTGCTCCCGTGCACAGCTTAAAGAGCTCTTCCAGCACTCACCTGCTGTCTTCATAGAGTATGACAGGAAGGACGAGTGGTCTTCAGGACGCTTCTACCATCTCAAAGACGTGTGTTGGCGAGATCCAACAGACATGTTTGTCAGATATAAGGAGCTGATCCGCAAGCCAGACAGCAGGGTCCAGGAACCTAAAGTATTGGCTCCATTTTATAGCAAATTGCAGCAAATGGATGAACTGTTTACGTCTTTGAATGTGGAGCCCAGTCCGTCCATGAAGCAGTATGTGGACCTTTTGGAGGTTGTATGTGAATCATCGCCACTTCCCACAGGAGAGGTGCTTCAGGATATCTCCATCATTTTTGCCAGACTGGCCAAAAAATGTAAGCAACCGCATGCGCATGCAGAGCAAGAACCAGACATCGAATTGAACCAGCACTACTGCAAAACACTGAAAGCGATGGTGTCTCGTATGAAGGTGTTTCCTACCAAGACACAGGGTTGGGTCACACTGGCCCGGAAACCTATGATAGCAGACAACCCAAGCCTTGAGAAGATCTTCAAATCTTATGCAGAAGTTTGCCTACTCAACCTGCCCTCAGCTCAGAAGAAAGCAGCCAGAAACCTTAAACCAAACCCAAAAGGCAAGCTGCATGAGGAGAAGCTGGCCTTCAGTGAGAGAGACCGAGAGCTGTTCCTGCAGATCTGTGGTGTGAAGAAACTCTCCCAGTGTGTCACCACCGAACCCCAGACGGAGAACTACAGGCCATGTCCAGCTATGCAGAACCTGGTGCATGACCTCATCCCGTACATCCAGAGGTTCATCTACCACCATGATGAGCTCAGAGAAATATACGAAGATCTGAAAGAGAGTGGAATTGGCCAGGAGATCAAGTCGCTGAGCTTCGGTCAGgtggGAAAGCTGTACATTTATTACCGTCTGGAACAGCCAGATGCGAACACCATTTTAGAGAGCGAGGACATCATATGTCTACTGAAAGACAAGAAAGAGTTGTACATTCAGAAAGATCATCTGTCATCCAAAATGGCCATCTGCAGAGAGCTGGTGAAACTGTTCACCACAGAGAAGAGCTTTGTGGAGgaactgaaacactttctcgAGGAGCTTGTTATCCGCATCAATGATACAGATTCTTTGAAAAGATTGCTGGATAATAAAGGCATTAAGGAGCTTCCAGAGGATGAAGAGCGATGGGAGGTTCCTGCACCGCTGGAGACACCCGAACCCAAGAAGCTCTTTGCCATCAGCTCATCAGGAACTGTGAGTACACAGGAAGTGGAGATGAAcacagaagaggaggaggatgataaACTGCACTCCTGGCCTCCAAAAGCATCTATCAGCAGAACAGGAGGCAGAAGCACAGGAAAAGGAAGCCAGGCAGTGGAGGCAGTAATGAAGATGTGGCCTCCTCCAGCACCTCCAACCTCTTCAGCTCCTCCTGTTTCTCCTGCACCTCCTGCTCACTGGGGCTCTGGAGCTGAGAGGAGCTCTTCCAGTACAAGTGCTCAGGAAAATACGGCAGAACTCCAGCTACACCCAGAGCCAGGCGCTCCGAGTATTCAGGGAATTCACGGACACAGGTCAAGTGGGAGCATCCCGCAAGCAGAAGCTGCTGGGCTGGTGGTCCAGGGTGTTGATGCTTCTAATGAAGCCCATGCTGGGTCCAGTGTGGCTCCTGGTGAGCAAGCTGAGGCCAGTGTGGACCAGCCAGAAAGCAACAGCACTCCATCTACAGCAGGAGAACAACAACCCACACTGCAGCCTTCAGAGCAGGTTCATAAGCCATTCCAGCCTCCAGAAGTCATGGCAAGCCAGTTCCAGGGAAGTGTTATTCACCGTCCACCCATGCCACTGGACAATGCAGTATGGACCAAACCGACAGTTGCAGAAGCAGTGCTGGAGGACCTTGCCCTAGACTTCAGTTTGCCCAACGCCCTGCAGGTATCAAATGGATACGATGACAACGATGATATCGGGAGATGGGGAGAGCAGCTGGTCTACTCCTTCCTCAACCGCTGGCGAGAAAGCGGAGAAGGACCACAAGAGATCACCTGGTCCAACCAAAGGGGTGAGAGCGGCCAGCCGTATGATTTCAAACTGATCTTCCCAAGTGGCTGTAATATCACGCGAGAGGTGTTTGTGGAAGTCAAGACAACAGTCAAGCAGGAGAAGCACTTTATTCACTTGTCAGCCAACGAGCTCGACTTTGCACTGAAGGAGAAGGAAAAGTATCACATATACAGAGTGTATGGTGCAGGAGATCCACAGCTAACCCGTCTCTGTCGCATCAAGAACCTTGCCCAGCATCTGCATTCCAAAACACTggaactatttttgtttgtgtagagtgaaaatatttaaaccttTTTATCAGTTGcctgtgtaattttattttgtactagTGACTTTATGCACTGTCCGCCTTTGGGTTTGGTCCACATTTTACATGGTTTTTATAATACAGGTGTAATTATAGTAAGATCTTTTAGTTATTTATACTTCTCTGTCTTGTGTTCTTTGAAATCAAGTcctttatatgttttataatttaaaatgctaaattaataaGCACGTtaaattttttagatttttttgaaTGTGAAATGATAGTTTATGTATGCcaattttatctttattaaacCAGAAATGACATGTTAagtaataattattcattaattattatattcattaattattatccATTAATCAATATAAAGCCAGACTGTACTGACTGTTGTGATTGTGTTAATTAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579293.1 lncRNA upstream 189420 8596654 ~ 8601770 (+) True LOC117598667
TU228231 lncRNA upstream 275256 8514382 ~ 8515934 (+) True G192760
TU228197 lncRNA upstream 403073 8310878 ~ 8388117 (+) True G192737
TU228175 lncRNA upstream 520964 8269148 ~ 8270226 (+) True G192716
XR_004579326.1 lncRNA upstream 529767 8259214 ~ 8261423 (+) True LOC117598703
TU228350 lncRNA downstream 83585 8918040 ~ 8918245 (+) True G192858
TU228722 lncRNA downstream 222944 9057399 ~ 9093247 (+) True G193170
TU228721 lncRNA downstream 323704 9158159 ~ 9158568 (+) True G193169
TU228720 lncRNA downstream 324978 9159433 ~ 9184089 (+) True G193168
TU228956 lncRNA downstream 544818 9379273 ~ 9380115 (+) True G193386
XM_026915475.2 mRNA upstream 1447 8786292 ~ 8789743 (+) True LOC113527546
XM_034309451.1 mRNA upstream 10345 8754318 ~ 8780845 (+) False si:ch211-176g6.2
XM_026915474.2 mRNA upstream 10346 8754509 ~ 8780844 (+) True si:ch211-176g6.2
XM_026915351.2 mRNA upstream 160833 8626799 ~ 8630357 (+) True tob1b
XM_026914896.2 mRNA upstream 201723 8546807 ~ 8589467 (+) False spag9b
XM_026914487.2 mRNA downstream 1594 8836049 ~ 8846681 (+) True bsk146
XM_026914717.2 mRNA downstream 64555 8899010 ~ 8906390 (+) True dhrs7cb
XM_026915891.2 mRNA downstream 93350 8927805 ~ 8940831 (+) True hs3st3l
XM_026914777.2 mRNA downstream 179198 9013653 ~ 9025559 (+) True LOC113527204
XM_026915517.2 mRNA downstream 195797 9030252 ~ 9035170 (+) True pts
TU227843 other upstream 1163079 7605981 ~ 7628111 (+) True G192484
TU227741 other upstream 1354818 7428579 ~ 7436372 (+) True tfam
XR_003402840.2 other upstream 1956933 6822740 ~ 6834257 (+) False asah2
trnap-cgg_7 other upstream 2001245 6789874 ~ 6789945 (+) True trnap-cgg_7
trnap-ugg_20 other upstream 2002424 6788695 ~ 6788766 (+) True trnap-ugg_20
trnaa-ugc_7 other downstream 273231 9107686 ~ 9107757 (+) True trnaa-ugc_7
trnal-aag_6 other downstream 273397 9107852 ~ 9107933 (+) True trnal-aag_6
trnad-guc_4 other downstream 430319 9264774 ~ 9264845 (+) True trnad-guc_4
trnad-guc_5 other downstream 431808 9266263 ~ 9266334 (+) True trnad-guc_5
TU228915 other downstream 434187 9268642 ~ 9271331 (+) False LOC113527534

Expression Profile