RNA id: XM_034309442.1


Basic Information

Item Value
RNA id XM_034309442.1
length 4335
RNA type mRNA
GC content 0.46
exon number 25
gene id kif20bb
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10014547 ~ 10025576 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAATCCGATTGGTGGAATTTAAACAGAAGACCGCGGACGATGGAAGTGCGGAGCTGACAGGGTGTTTTGTTAGGTTGAGTAAGAACGgttaaatagctagctagaacATTATAACAAACCAGggagaagaaataaaacaggaagaaagaaaataaggtTTAAGTCGAATGTGTATCACGCAGGAGTAATTGTATGTTGTTCTCAAAGTAGTTTAAGAGAAGTTTATGTATTTCTCAGAACCATGGAGTCCTGCTTGAATTACAAACCCGAGAGAGTGGGCTCTGTAACTGTTGAAGACCTGAGAAAAGATCTTTTTACAGAATTCTCCAAAATACCTGCGTCTCAGGAACCTGTGTTTGGGGAGAAGGAACACTTGCAGGTCTACTTGCGGATACGTCCTTTGTCCTCCACAGAGAGTGAATTGGGTGAATCACAGGATTGCATTTCAGTCGAGCTGCCAGATACTGTGGTTTTAAAGGCCCCTCGATTATCACTGACAGCTAGACAGAGTGAAAAACTAGGACCCCAACTTGCACAGCGATTCCAGTTTTCAAAGGTGTATGGGCCGGAAACAACACAAAGACAGATGTTTGATGGAACAACAAAAGCCCTTGTGAAGGATGTCCTAGGAGGAGAAAATTCATTAGTTTTCACGTACGGTGTAACCAATGCCGGGAAGACGTTCACGTTCTTAGGCCCTGAAAGTGATGGAGGAATTCTGCCCAGGTCACTGAACGTCATCTTTAACAGCATTGTGGGACGAGTCTATACGCAGAATAACATTAAGCCCCACCGCTGTGTCGACTTCACAAGACTGACTAAAGaccagcaggaggaggaggccAAGATTAAGAAAAGCCTCCTAAGAAGATTAAAAGAGAATGATTTGCAAAAAAGCACCTCCAGCATGTCAAGTTCGGCTAGCAGCACCTTACTAGAGGGTTCGAGCTATGGTGAGTTAGATGAAGACAGTCTTTGTTTGGAGGAAGATTCCCATGTGAAGTTCTCAGTGTGGGTCTCCTTCTGTGAGATCTACAATGAAAACATCCACGACCTGCTCGACTTTGCCTCAAATACATCCCACAGAAGGAGCGTGCTACGACTGTGTCAAGATGTCAAAGGCAATACATTTGTCAAAGaTCTGACATGGGTCCAGGTAAACAATGCAGATGAAGCCTACAAAGTTCTAAAGATTGGAAGGAAAAACCAGAGCTTTTCTTCTACAAAGCTCAACAGCGTTTCAAGCAGAagCCATAGTATTTTCTCCATCCGAATCCTGAGAATCGAAGACGTGGGTGTTCCTCGAGTCCAGACAATAAGCGAGCTGTCTCTGTGTGATCTGGCCGGATCAGAGCGATGTGCAAAAACCCAGAACAGAGGAGATCGCTTAAAAGAAGCTGGGAACATTAACACATCGCTGTTAACTTTAGGAAAATGCATGAATGCATTGAGACTGAGTCAGACACAGTCAAAGTTCCAGCAGCATATCCCCTTCAGAGAGAGCAAACTCACTCACTACCTGCAGGGCTTCTTCTGCGGCCGTGGAAAAGCCTGCATGATAGTTAACATCAACCAGTGTGCTTCCATGTACGACGAAACGCTCAACGTCCTCAAATTCTCGGCAGTGGCTCAGAAGGTTGTGGTCTTGAACCCCAAACCAGTCTTAAGTGTTGTGCCCAAGAAATCTGCCCGAGAAGTCTCCATGATGATCAACAATGTGGACAGGAGAGAATGGACCAGGAGGAGCACCTTGATTGGATGGGAGACAAGCTTAGAAGACGTtcaggaggatgaggatgatgaagaaatggaggtagatgaggaggaagaagaggaaagtGGTGAGGAGAGCATGGTGGAAAATACAGTGCTAGAAGCTGCAGAAGATCAAGAGCTGGGTGAGCTACAGCAGAAGATTAAAGAGCTTACAGAAGAACTGTCTAAGGAACAATCTGAAAAAATGGCCATGGAATCTCGAATCCGGGAAGAAGTTACCACTGAGTTCATGGAGCTGTTTTCCAATATGGAAAAGGATTACAATGAACgtctacagagagagaaagaaatagctGAAGAAAGAGCTGAGAGGAGATTGGAAATACTTAAGAATTTAGTCAACAAAAATGACACTGAGATGGCAACCACGAGTTCTGCTGAGGATGGATCTAAAGAGATTAGAGTGACGTTCTTGGATGGGATGATTGAAGAGATGCAAAATGACCTGGCTAAGATAAAGAGAGATGCCGAGGCTGCACAGACGTGTCTGGAGAGCACAGGTCATTCTCCCAGAGCTGTCAGCAAGCTGAGGACACAGCTGGATGAGATGACAAAAGAGCTTCTTAAAAATCATCAGCTCCTGGATATCAAAACTAAGGAAATGGAAGAAGTGCAGGTTTGTTTACAAAATTCCAATGACCAGCTGCTGGAGGCTAACAAGAATTatgaaaatcaaaaactgagAAATCAACAACTTTTGGAACTCTGCCAAGAAAAAGATGAAATGATCTCCAAGCTTCAGACTGCTTTGGATCAAAATGTTGAAGCAGCTAATGAAGATAGGGCCTATATCGACAGCATTAAAGAGGAAATCGTACACTATAGAAATAACTGCAAGTGTATGCTCAATGATGccgaagaaaaaacaaaagaccaGGAAATTCAGCAGCTTGCAGAagctttaaaagagaaaaatgactACTTGGCTGAGCTCAAGCATGAACGGCATTCTCTTGATCAAAAGTTGAAGGATCTGACTGAAGATCTAAAACAACAAGGTCATGCATGTGATGCTGCTTTGTCTTTACTTGAAACAGAAAAAGCAGCAACCGCCAAACTAACAAATGAGAACAGAGCACTTGTCAATGAGCTCGGTGATTTCCAGCAAGCAGCCAATGACATGAAGTCCAGGCTCACAGCCATGGAAACTGAATTGAGCATTAAGACAACGGAGGCAGCCAAGCTTTCTGAGGAGCTCCAAAAAGCCCAAGTTCTTCTCCAAAAGCATCAAGAAGAGGCTACTGAGCAATCTCAGAAGATCAAATCCCTAAAGCTGGAGGCTGAGAACTTGCGCCAGAAGCTCAGTGCCCAGGAGCTTTCGGaaggacaaacaaacaagtgtGTCTTCCAAGAGACCATCGCAGCTCTTCGTAGAGAATGTGAGACAGTGATGTCCATGTCCCAGGAGAAAAGCAGGAGGATCATGACCCTGGAGCAGGAAGTCAGTCAGATAAGGGAGGAAATGTGCCAGAAGCAGACCCTGTGCAATCAGCTTGAGCAGGAGCGAGGTGCTCAGAGAGAGGAGAACCAACACCTGCTCGGCTGCTATGAAGCCGAGAAGCTGATTGTGGAGCAGTTGAAGAGAAGTCACTCTGAGCTGGAGACAGAGCTGCTTGGTGTAAGACAGCAGTTAGCAGTCCTGGAGGAGCAACAGCAGGCCTTTACACACAGCTCGAAGAGAGTTGGAGAGCTGGAGAAGAAGCTCAGTGAGAAAGAGGCTCATTGTGCAGATCTGGAACAGAGACTCCTGCAGACCCAGAACAAACTGAACCAGGCGgaggagagagatagacaggtgGAGAGCTCTCtaaaaaagaggagaaaggaAGTGGAGGATAGCCTTGTTCACAAGAACGCAGAACTGGAGATTAAAGCTCAGGAACTGTTACAATCTAAAAAACAGGTGAATGATGGGCTGGACACAATTAAGAGGTTAGGTCTTGATCTGGACCAGAAGGAGAAACGCATCTCTGATCTACTTTCTCAGCTGACTGAGAGCAATGCTGAAACTGAGCAGATGCAAAAAGAGATTGCAACCTTGTCTGAAGAAGTCAGAACGCTGCAACAGAAGCTGTGTGACTTGGAGAAAGACAGGGATCAAGCTCTGAGTGCTGTCGCCAAAAAAGAGCAGATTATTGAACAACTGAAGACTGACCAAGCCAACAAAGCTGAATCACTGCGGCACCATGAAACCTGTCAAGAGCTTCTGGCCAAGGAAAGGCTCATTGAGGAAATGCGTCGCACCCTGTCAGATGAAAAGAGGTCACGGACGGAACAAGAGCGACTTCTGGAGGCTAGACTCAATGAGATTGAATCGTTAAGTGGAGAGCTTATGAAGCTGAAGGAGAGCTGTCAGAGAAAGAGTGTGACTGAGTCTGGACCTGATCACTCGCACCATGaggagcaaaaaataaaaaaagcttcaGTTTTTTGACAACTTCCGTGCACGAGTCCTCAGTGCTCTCTACCgagggtgagagagaaaagCGCTTCCCCAAGCCCGAGCTGGAGATCAGCTTCACCCCTCTCAAACCTGACCGTCTGAACATCCGCAGGC

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 187684 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 190080 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 233593 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 349032 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 361288 9652172 ~ 9653260 (+) True G193542
XR_004579148.1 lncRNA downstream 118799 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 199148 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 299402 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 300086 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 307352 10332906 ~ 10336247 (+) False G193828
XM_026915701.2 mRNA upstream 5425 9995500 ~ 10009123 (+) True ankrd1b
XM_026915714.2 mRNA upstream 99411 9909188 ~ 9915137 (+) False ppp1r3cb
XM_026915713.2 mRNA upstream 99411 9911556 ~ 9915137 (+) True ppp1r3cb
XM_026915690.2 mRNA upstream 111325 9884636 ~ 9903223 (+) False mpp3b
XM_026915398.2 mRNA downstream 18355 10043909 ~ 10053194 (+) True pank1b
XM_034309439.1 mRNA downstream 19675 10045229 ~ 10053194 (+) False pank1b
XM_034309422.1 mRNA downstream 27919 10053473 ~ 10062239 (+) False slc16a12b
XM_034309423.1 mRNA downstream 27919 10053473 ~ 10062239 (+) False slc16a12b
XM_026915284.2 mRNA downstream 27920 10053474 ~ 10062239 (+) False slc16a12b
XR_003402888.1 other upstream 379481 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 500713 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 501917 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 502308 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 504752 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 38991 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1260643 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2447129 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3457747 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3457747 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile