RNA id: XM_034309479.1


Basic Information

Item Value
RNA id XM_034309479.1
length 4173
RNA type mRNA
GC content 0.53
exon number 31
gene id polr3a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25709893 ~ 25745120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGTGAAGGAGCAgttcagagagacagatgtggCCAAAAAGATAAGCCACATCTGTTTTGGGATGAAGTCGGCGGAGCAGATGCGGCAGCAGGCTCACATTCAGGTGGTCAGTAAGAACCTGTACAGCCAGGACACGTCTCACACACCGCTGCCCTACGGAGTGCTGGACCACCGCATGgggaCGAGTGAGAAGGACCGTGGCTGTGAGACGTGTGGGAAGAACCTGGCGGATTGTTTGGGTCATTACGGTTATGTGGATTTGGAGCTGCCCTGCTTCCACATCGGCTACTTTAAAGCCATCATCGGCATCCTGCAgatgatcTGTAAGACGTGTTCTCGGATCATGCTGAGTAAAGAGGAGAGGCAGCAGTTCCTGGATTATCTGCGGCGTCCCGGGTTGCCGTACCTGCAGAAACGCGGCCTGAAGAAGAAAATCTCAGACAAGTGCAGGAAGAGGAACGTGTGTCTTTACTGCGGAGCCTtcaacggcccGGTGAAGAAATGTGGTCTGTTGAAGATCATCCATGAGAAGTATAAAAGCAGTAAGAAGGTGGTAGATCCCATTGTGTCTGATTTCCTGCAGTCCTTCGACACGGCCATCGAACACAACAAAGAGGTGGAGGGACTGCTCACCAGAGCTCAGgaaAACCTGAATCCTCTGGTGGTGCTGAATCTTTTCCGGAGAATTCCCGGTGAGGACGTTCCTCTGCTTCTGATGAATCCGGAGGCGGGGAAACCCTCTGACCTCATCCTGACCCGCCTCCTGGTCCCGCCCCTCTGTATCCGCCCCTCTGTCGTCAGTGACCTCAAATCGGGTACTAACGAGGACGACCTCACCATGAAGCTGACCGAGATCATCTTCCTCAACGACGTCATCAAGAAGCACCGCATGTCAGGAGCTAAAACTCAGATGATCATGGAGGACTGGGACTTCCTGCAGCTGCAGTGTGCTCTCTACATCAACAGCGAACTGTCAGGAATCCCGCTCAACATGGCACCCAAGAAGTGGACTAGAGGATTTGTCCAGAGGCTGAAGGGCAAACAGGgaCGTTTCCGTGGTAACCTGAGTGGAAAGAGAGTGGATTTTTCCGGAAGAACGGTCATCTCTCCCGACCCGAACCTGAGGATCGACGAGGTCGCTGTTCCTGTCCACGTCGCCAAAATCCTCACTTACCCAGAgaagGTGACCAAAGCCAACATGGAGCTGATGAGGAAGCTGGTGAAGAACGGACCAGACGTTCATCCTGGAGCGAACTTCATCCAGCAGAGACACATGCAGATGAAGAGGTTCCTGAAGTACGGGAACAGAGAGAAGATGGCTCAGGAGCTGAAGCTGGGGGACGTGGTGGAGAGACACATGATCGATGGAGACATCGTCCTGTTTAACCGCCAGCCGTCACTACACAAACTCAGCATCATGGCACACATCGCGCGTGTGAAACCCCACCGGACCTTCCGCTttaacgagtgtgtgtgtacgccTTATAACGCCGACTTTGATGGAGACGAGATGAACCTTCACCTGCCGCAGACTGAGGAGGCCAAAGCTGAGGCTCTCGTACTCATGGGgACGAAAGCTAACCTGGTCACCCCAAGGAATGGTGAACCTCTGATCGCTGCTATTCAGGACTTTCTCACAGgtggtTATCTTCTCACTCTGAAGGACACGTTCTTCGATCGAGCTAAAGCCTGTCAGATCATCGCCTCCATCCTGGTGGGCAAAGACGAGAAGCTCAAAATCGCCCTCCCTCACCCTGCTATTATAAAGCCCGTGTGTTTGTGGACAGGGAAGCAGATCTTTAGTTTAATCCTGAAGCCCAGTAAGATCTGCCCGGTGAAGGCGAACCTGAGAACCAAAGGCAAACAGTACTGCGGCCGAGGAGAGGACCTGTGTCACAACGactccttcgTGGTGATCCAGAACAGTGAGTTACTGAGTGGCAGTATGGATAAAGGCACGCTGGGTTCAGGGTCAAAGAACAATATCTTCTACATCCTGCTGAGAGACTGGGGTCAGGTGGAGGCAGCTGACGCCATGAGCCGCCTCGCCCGAGTCGCACCCACATACCTCTctaaCCGTGGGTTCTCCATCGGGATCGGGGACGTGACCCCTGGTCAGGGTCTGCTGAAGGCCAAACAGGAACTGCTCGACGCCGGGTACAAGAAGTGTGACGAGTACATCGAGGCCCTGAATACAGGAAAACTACAGCAACAGCCGGGTTGTACAGCTGAGGAGACGCTggaggTGCTGATCCTTAAAGAGTTGTCAGTAATTAGAGATCATGCTGGCAGTGCGTgtctgagagagctggacaagAGCAACAGTCCACTCATCATGGCTCTGTGTGGCTCGAAAGGCTCCTTTATTAACATCTCTCAGATGATAGCGTGTGTGGGTCAGCAGGCCATCAGTGGCTCTCGAGTTCCCGATGGATTTGAGAATCGATCGCTGCCGCACTTTGAGAAACACTCAAAActtCCCGCAGCTAAAGGCTTTGTGGCAGACAGTTTTTACTCGGGTTTGACCCccactgagttttttttccacactatGGCTGGCCGTGAGGGGTTAGTGGACACGGCGGTGAAAACAGCAGAGACCGGCTACATGcagaggCGTTTGGTGAAGTCTCTGGAGGATCTGTGCTCTCAGTATGACCTCACCGTGCGCAGCTCCACCGGTGACATCATCCAGTTCATCTACGGAGGAGACGGACTCGACCCCGCTGCCATGGAGGGCAAAGACGAACCGCTCGAGTTCAAGAGAGTGCTGGATAACATccggGCGGTCTACACCTGTGCTGATGAACCTGCTCTGAGTAAAAACGAGCTGGTGCTGACCGCTGACTCCATCATGAAGAGGAACGACTTCACCTGCTGCAGAGACACCTtcttacaggaaattaaaaaatttatcaACAGCGTGGCAGAGAAAATCAAGAAGACCCGAGACAAGTACGGCATAAACGATAATGGATCCACAgagCCTAAAGTTTTGTACCAGCTGGACAGAATCACGCCCACACAGCTGGAGAAGTTTCTGGAAACATGCAGGGACAAGTACATGAgAGCTCAGATGGAGCCGGGCTCGGCCGTGGGCGCTCTGTGTGCTCAGAGTATCGGAGAGCCTGGAACCCAGATGACCCTGAAGACGTTCCACTTTGCGGGTGTGGCGTCGATGAACATCACGCTGGGGGTACCCCGCATCAAAGAAATCATCAACGCCTCCAAGAACATCAGCACACCGATCATCACTGCACACCTGGACACGGAGGACGACGCAGACTTCGCCCGGCTGGTGAAGGGCAGGATTGAGAAGACGCTCCTGGGAGAGatctCAGAGTACATAGAGGAGGTGTTTCTGCCTGATGACTGCTTCATCCTGGTGAAACTCTCACTCGAGAGGATCCGTCTTCTCAGACtggaggtgaACGCAGAGACAGTCAGGTACTCTATCTGTATGAGTAAGCTGCGTGTGAAGCCGGGTGATATAGCGGTTCACGGTGAGgcggtggtgtgtgtgtctcctcgAGAGAACAGCAAGAGCTCCATGTACTACGTCCTGCAGTCACTCAAACAGGAGCTGcccaaggttgttGTACAGGGCATTCCCGAGGTTTCGCGCGCTGTGATCCACATTGATGAACAAAGCGGCCGTCAGAAGTTCAAGTTGCTGGTGGAGGGAGACAACCTGCGCGCTGTCATGGCAACACACGGTGTCAATGGCAACCGCACCACGTCCAACAACACAtacgaggtGGAGAAGACGCTGGGCATCGAGGCCGCGAGGACGACCATCATTAATGAGATCCAGTACACCATGGTGAATCACGGCATGAGCATCGACCGGCGTCACGTCATGCTGCTCGCTGATCTCATGTCCTACAAGggggAGATTCTGGGCATCACTCGCTTCGGCTTGGCCAAGATGAAGGAGAGCGTCCTGATGCTGGCGTCGTTCGAGAAGACCGCTGATCATCTGTTTGACGCTGCGTATTTCGGACAGAAAGATTCTGTGTGTGgtgtgTCTGAGTGTATAATAATGGGAATCCCCATGAACATTGGCACTGGTCTGTTTAAACTCTTACACAGAGCAGACAAAGAACCCAATCCTCCACAGAGAACCCTGCTGTTTGACACAGCTGACTTCCATATACCACTGGCCtcctag

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001056 RNA polymerase III activity molecular_function
GO:0032549 ribonucleoside binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239584 lncRNA upstream 12862 25641036 ~ 25697150 (+) True G202455
TU239597 lncRNA upstream 14343 25692079 ~ 25695669 (+) True G202467
TU239586 lncRNA upstream 60130 25648389 ~ 25649882 (+) True G202457
TU239571 lncRNA upstream 107574 25598775 ~ 25602438 (+) True G202445
TU239565 lncRNA upstream 123248 25586355 ~ 25586764 (+) True G202439
TU239682 lncRNA downstream 203795 25948871 ~ 25968572 (+) True G202541
TU239683 lncRNA downstream 203795 25948871 ~ 25957298 (+) False G202541
TU239703 lncRNA downstream 244032 25989108 ~ 25995087 (+) True G202557
TU239706 lncRNA downstream 254672 25999748 ~ 26000315 (+) False LOC117598538
TU239722 lncRNA downstream 288064 26033140 ~ 26033815 (+) False G202567
XM_034309206.1 mRNA upstream 298753 25400520 ~ 25411259 (+) True dupd1
XM_034309369.1 mRNA upstream 311995 25394338 ~ 25398017 (+) True LOC117598572
XM_034309368.1 mRNA upstream 315710 25390697 ~ 25394302 (+) True LOC117598571
XM_034309370.1 mRNA upstream 320131 25386835 ~ 25389881 (+) True LOC113524867
XM_034309367.1 mRNA upstream 323624 25382865 ~ 25386388 (+) True LOC117598570
XM_034309535.1 mRNA downstream 28438 25773514 ~ 25791680 (+) True tbata
XM_026911246.2 mRNA downstream 58713 25803789 ~ 25818928 (+) True star2
XM_034309498.1 mRNA downstream 224893 25969969 ~ 25973840 (+) True ndr2
XM_034309310.1 mRNA downstream 229955 25975031 ~ 25981707 (+) False lrrc20
XM_034309308.1 mRNA downstream 231568 25976644 ~ 25981707 (+) False lrrc20
TU239496 other upstream 207384 25498180 ~ 25502628 (+) True G202374
TU239521 other upstream 211093 25497715 ~ 25498919 (+) True G202397
TU239415 other upstream 355722 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 1044487 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1327725 24381787 ~ 24382287 (+) True G201962

Expression Profile