RNA id: XM_034309487.1


Basic Information

Item Value
RNA id XM_034309487.1
length 1008
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC117598634
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2245794 ~ 2269055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACATGGCCACCACCaacacaaacatggccaccactaacacaaacatggccgccaccaacacaaacatggccaccaggGACTACGAAAACTTTTGCAACTGCAGCCATCTCTGCTGTCTgacattatggaaggagtctccagtgtcagagCACTTGGCTCTGGTCTTTGGCTCAGATTGGTGGCTCACGGttcaacccaaaacacacagcatgtttgatttagttcCTATATTTGGGACGATTCAGGatcgaatcactttctcagtGCAGCAAACATCTCAAGTCAACAAACATCTCAAgGAAATAAGAACCGGTTTGCATAGGTCATTTCACACAAAGGAACAAAAGTTCAGTTTGTCAGATTACGGGAGAAGGTTCTCTGAAGGACATATAAAGGACTGCAGAGGGATGTTCAacacatttcttatttcttactGTGCGTCAGTGATGGAGAAGCACCTGTTCAGAATCCTGTTTTTTACTGGCATCATGAACGTCGTCCTGTCAGTCTCACTCAAATACTACCTGATTCAGCAGGGGAAAACGTGGAACGATGCTCAGGCTTATTGCCGAGCCAACTATGATGACCTAGCCGAGATCAAGAGTGATGACAACATGATCCGACTTCGGAGTGAAGTACAGAGGCAACGATTCAACTCCAAAGCTTGGATTGGAATGTACATTGACATGAACAGCTGGTACTGGTCTCTTCAAAATGAGCCAGTGGGAAGTACACGTATGTGGGCTACATATTGGAATCAGCCTAACAACGCGGGCGGAAATGAACTGTGTGGCGGGATAGATCCATGGGGTTGGTTGGATGCATTCTGTTACACTTTACTACCCATTGTGTGCTTTGATGGTGAGGAACGACATTGTtctatttgccattttgggtgTTCGAACTATTTGTAACTGTTTGTTTTCGGTGATCTTGCTGAATTTACATATGCTCCAAGGGTCAAAGATATTAAACAGAAAATCTTACATTGCTTTAAAGCTATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224340 lncRNA downstream 83223 2160630 ~ 2162571 (-) True G189521
TU224331 lncRNA downstream 98879 2146712 ~ 2146915 (-) True G189512
TU224263 lncRNA downstream 184529 2048830 ~ 2061265 (-) False G189451
TU224262 lncRNA downstream 196376 2048830 ~ 2049418 (-) True G189451
TU224223 lncRNA downstream 255639 1989519 ~ 1990155 (-) True G189412
TU224375 lncRNA upstream 11491 2280546 ~ 2280753 (-) True G189547
TU224575 lncRNA upstream 124971 2394026 ~ 2399476 (-) True G189702
TU224592 lncRNA upstream 322182 2591237 ~ 2609773 (-) False smarcd2
TU224598 lncRNA upstream 334138 2603193 ~ 2604096 (-) True G189717
TU224599 lncRNA upstream 334138 2603193 ~ 2604043 (-) False G189717
XM_034309553.1 mRNA downstream 79 2243875 ~ 2245715 (-) True LOC117598663
XM_026947891.2 mRNA downstream 21494 2215401 ~ 2224300 (-) False emc9
XM_026947892.2 mRNA downstream 21494 2215401 ~ 2224300 (-) True emc9
XM_026947855.2 mRNA downstream 34815 2194344 ~ 2210979 (-) True LOC113547489
XM_034309386.1 mRNA downstream 34842 2194344 ~ 2210952 (-) False LOC113547489
XM_034309549.1 mRNA upstream 39186 2308241 ~ 2334652 (-) True med24
XM_034309128.1 mRNA upstream 66578 2335633 ~ 2345673 (-) False samd14
XM_034309127.1 mRNA upstream 66579 2335634 ~ 2345673 (-) True samd14
XM_026947903.2 mRNA upstream 92769 2361824 ~ 2363285 (-) True LOC113547524
XM_026947813.2 mRNA upstream 314726 2583781 ~ 2590145 (-) False psmc5
XR_003404831.2 other downstream 34815 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 674721 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 680534 1564890 ~ 1565260 (-) True G189180
TU224780 other upstream 523991 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 531021 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 583000 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2629719 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2630911 4899966 ~ 4900037 (-) True trnap-agg_2

Expression Profile