RNA id: XM_034309498.1


Basic Information

Item Value
RNA id XM_034309498.1
length 1495
RNA type mRNA
GC content 0.55
exon number 3
gene id ndr2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25969969 ~ 25973840 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGCCAGCGGGAGTGCTCCTGCGCCTGCTCCACCTCACCGCTCTGGGACTGGGATCAGGATCCGGGACTCAGAGGAACGAGACTCATCACTTTCCCTCCTACATGATGCGTCTGTATCGCAGCTTCAGCACCAATCAGACTCCAGCACcgccatcttcatcatcatcatcatcatcatcatcatcatcacttcatcagctccatcacctccatcatcatcatcatcatcatcacacggATCAGGAGAGAGCGGTGAGAGCCGACACGGTCCGCAGCGTCGCTCCCAGGAATTTAGTCTTTCGAGACAGAAGCTGGATCACGACCTTTGACCTTTCCACTTTGCTCTCTGAGCGCCACATCCAGGCCGCTGAGCTGAGGATCCGCGTTCCCATGGCGACCGGTCAGCCGAACGTTACCGTGGAGCTGCGTCATCATCAGGACCGGCCGTGTCCCAAACGCAGCGCGTGTGTCGAGGAGCAGTCGCTGGGATTTCTCCCAGAATCCTCTCTGATCAGCTCGTCCAGTCAGTGGAGAGTGTATAACATCACGGCTCGGCTGCTCCAATGGATGGACGACGCGCTCtcgcagaggaggaggaggacgatgAGGAcgaaggtcaaaggtcacgccCCTTCAGGCGTCAGGGTGGTGAACGCGGGGATGAATCGAGCGCTGCTGGTGGTGTTCTCACACGAGGGATCGAAGGACGGAGAGCAGGATAAAGCGAGTCTGCTGCGTACGGCCGAGCGCTCCAAATTCCTCCTGAGTGCAGAGAGTCAGGTGCTGAGGAGGGTGAAGAGGCAGAAGAGCCGCCGCAAGAACGAcaagaacgagagagagagagagaacgagaagAAAAACCTCTGCAGGAGAGTGGACATGCACGTCGACTTCAACCAGATCGGATGGGGCTCCTGGATCGTCTTCCCTAAAAAGTACAACGCCTACCGCTGTGAAggggcgtgtcccaatccactCGGAGAGGACTTCCACCCTACAAATCACGCCTACATGCAGAGTTTACTGAAACACTTCCAGCCGAGCCGCGTGCCCTCGCCGTGCTGCGCTCCGATCCGCACCAGCGCCCTCAGCATGCTGTACTACGAGAACGGAGAGATGATCCTGCGGCATCACGAAgagatggtggtggaggagTGCGGCTGTCACTGAGGGGCTGGAGGGAGCGAGCGAGCGAGGGATCACGCTTCTACACCTCCGTCTCCATcgaacaaacacaaacacccaaCCTCTTAAACACAGGGGTCTGAAAGGCTTCGTCCCAAATCATctagaaaaaaacacatacaaacaataaccctacgtagtgcactacatgtccagCAGTTTCCTCCTCCCTACtttagtgcactagatacggAGTGTAGAGCGAGTTCACTACGTACGCTCACTACATAGGGGTGAAATAACAGTCTCTGTTTCCTGCGTACTTTTTAACGAGGGACTTTTGTTCTTAAGCACTGCTCATGCATTTAA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process

KEGG:

id description
K04666 NODAL; nodal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239682 lncRNA upstream 1397 25948871 ~ 25968572 (+) True G202541
TU239683 lncRNA upstream 12671 25948871 ~ 25957298 (+) False G202541
TU239598 lncRNA upstream 187258 25692079 ~ 25782711 (+) False G202467
TU239584 lncRNA upstream 272819 25641036 ~ 25697150 (+) True G202455
TU239597 lncRNA upstream 274300 25692079 ~ 25695669 (+) True G202467
TU239703 lncRNA downstream 15268 25989108 ~ 25995087 (+) True G202557
TU239706 lncRNA downstream 25908 25999748 ~ 26000315 (+) False LOC117598538
TU239722 lncRNA downstream 59300 26033140 ~ 26033815 (+) False G202567
TU239721 lncRNA downstream 59405 26033245 ~ 26033815 (+) False G202567
TU239723 lncRNA downstream 59405 26033245 ~ 26033815 (+) True G202567
XM_026911246.2 mRNA upstream 151041 25803789 ~ 25818928 (+) True star2
XM_034309535.1 mRNA upstream 178289 25773514 ~ 25791680 (+) True tbata
XM_034309478.1 mRNA upstream 224849 25709893 ~ 25745120 (+) True polr3a
XM_034309479.1 mRNA upstream 224893 25710012 ~ 25745076 (+) False polr3a
XM_034309206.1 mRNA upstream 558710 25400520 ~ 25411259 (+) True dupd1
XM_034309310.1 mRNA downstream 1191 25975031 ~ 25981707 (+) False lrrc20
XM_034309308.1 mRNA downstream 2804 25976644 ~ 25981707 (+) False lrrc20
XM_034309309.1 mRNA downstream 2811 25976651 ~ 25981707 (+) False lrrc20
XM_034309307.1 mRNA downstream 2845 25976685 ~ 25981707 (+) True lrrc20
XM_034309305.1 mRNA downstream 25811 25999651 ~ 26004969 (+) True LOC117598538
TU239496 other upstream 467341 25498180 ~ 25502628 (+) True G202374
TU239521 other upstream 471050 25497715 ~ 25498919 (+) True G202397
TU239415 other upstream 615679 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 1304444 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1587682 24381787 ~ 24382287 (+) True G201962

Expression Profile