RNA id: XM_034309502.1


Basic Information

Item Value
RNA id XM_034309502.1
length 1469
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC117598642
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12466585 ~ 12468184 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGAGTAACAGAAATTTTGATGATGTTAGCAGTTCATCACTCTATATACTGAGTGGCTGAAAATAGTAGCATTGTCAGCATTGCTGAAACAAAAGACTGTCACCTTGTTCTTGCCAGAGATTTTGTCTAGCCAGAAGAACTTGAACCTGAACTGCAATGGCAGCAATTGTTACTGGTCTGATCCCCATCCTTCGCACTGCAGTGGACACCACCACCACCTACAAAGGGCGCACCTTGTGGTTCAGCTTTCTCTGTATTCGCCTTGTGACACTTTTTGTGGCTGAAATGCCTTGGTTTAAATTGAATTCAGACTTCAGTTGCAATGTCACCAAGGACAGCGTGTGCACTAGAGCCTGCTTCAACCAGCACTTTGACAAGCCTGTGGTAATGGCTTGGAACTATATTTTCATCCTCCTCATTCTGTCGGTCCTGCTGATGGAGCTTTTCACTACCCACATACACTCAGTTTTTGAGAAGAACTTGGGAGAGAGGCAAGAATCTCTGGGTGAGCTGAAAACTGCAAGTGACCCTGGCAATAACATTGCTGGGATAATGATCTTAGACATGCACAGAAGGAGGAATGCTGTGTTTTTCTACCTGTTCAGCGTTATGCTGCGGATTTTGGTTGAGTTTTGGTTTGTGTATGTTCTGCTTTATTGGAACTTGTCTAAACTAAACCAAGGGGTGTTCGTATGTAAGAGTTATGCCATTGGATGTCCAGATCAGGAGTGTTTGGTGAGTGGCAATGCTGAGAAATGCATGTCTATCTATGCTTTAGTGTCCATTTCTGTCCTGGTCATCATCAGCAGTTGTTTGTTCTGTGTCCACTTAATTGGCCACTACCTCTGTAACTGTTGTACCAAAGAATCTTACAGTGTGTAATTTCATTGTTTGCAAAATGTATTTTGGTTTCTCTGAACAAGTGTGGTCTTTCATTCATGTCTTTCTTTGTTctgttaaacatttttcagACCAGTGTTACTGTGTATGAAATTGTTTGAATATCATTGAATTAAAAACAggtttgctgtgttttattgaaTTGTGACATGTGTGGCAATAAAGGGTGTCACAATTTGATCAGTTTTGGCTGTGTTGAGCATGGTGTTTCTGACctaatgtttctgtatttttctttcttttttcttttgggtTAAGATGTTGGAACATTGTGCCTTAAGAACCGTGTAAGTGCACAAGACAAAGAAATTATTCTCACAGTAGTTTACCATGCACTAAATATGTTTCTTTCATCATTCACTTATTAAAAAGCATGGATTATATTGCTATAAAAATTACTGGAATGATTTAGCTAATATATTGTGAGCATATTGAGTCTTGGCCATATCAAGGTCAGAGGTTTGAACTGCAGCATTCTCTCTCCACCAGATGAGGCACTTTCACCTCGCATTCCTTGGTACAGGTGCCCTGATgtacatcatttaaaaacaactgacaataatgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579205.1 lncRNA upstream 12907 12451893 ~ 12453678 (+) True LOC117598562
TU231049 lncRNA upstream 92305 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 95300 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 216830 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 290466 12174394 ~ 12176119 (+) True G195016
TU231214 lncRNA downstream 81950 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 175084 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 189921 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 376141 12844325 ~ 12844561 (+) True G195512
TU231613 lncRNA downstream 490756 12958940 ~ 12963243 (+) False ablim1b
XM_026915683.2 mRNA upstream 151 12462862 ~ 12466434 (+) False znf668
XM_034309353.1 mRNA upstream 151 12463111 ~ 12466434 (+) True znf668
XM_026915424.2 mRNA upstream 19589 12434535 ~ 12446996 (+) False rnf40
XM_026915425.2 mRNA upstream 19589 12434631 ~ 12446996 (+) True rnf40
XM_034309620.1 mRNA upstream 36050 12422750 ~ 12430535 (+) True phkg2
XM_026915699.2 mRNA downstream 4495 12472679 ~ 12473983 (+) True LOC113527673
XM_034309496.1 mRNA downstream 4507 12472691 ~ 12473983 (+) False LOC113527673
XM_034309533.1 mRNA downstream 15950 12484134 ~ 12487553 (+) True si:rp71-1c10.8
XM_026914610.2 mRNA downstream 15950 12484134 ~ 12487553 (+) False si:rp71-1c10.8
XM_034309464.1 mRNA downstream 27484 12495668 ~ 12502869 (+) True valopb
trnaq-cug_16 other upstream 1180317 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2401959 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2831518 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2952750 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2953954 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 4499 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1015117 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1015117 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4387586 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5109099 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile