RNA id: XM_034309517.1


Basic Information

Item Value
RNA id XM_034309517.1
length 2864
RNA type mRNA
GC content 0.37
exon number 10
gene id stx4
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11457352 ~ 11466041 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgcacacactgcacggCTGTAGAGGGTGTGTATTCTCAGTAGGTGGTGGTGTGCACTGCATGCTGCAGCACGACTCCCGCAGAAGAAGCAGAGAGACTCGGAACCACTTTGAATGGAAACTCCCTTTTTCTCCTGTTACTGTCACACAGTTTGGTAATTTAGATGAAGTAACTCGAACTTCAGAAAGCGGTTATAAACGGAGCAAAAATGCGCGACCGAACCAAAGAACTGGGAAATCCTGCAGATGGCtcggatgaagatgatgaaggcACAGCACTCATGATCAAACCAGGCACAGGGACCTCCATGAAGGAGGACCGAGAGAATGAGTCTTTCTTTCGGAagGTCCATGACATTCGAGAGGGGCTTGAAACTCTTAAGAAGAAAGTATCTGAACtggagaacaaacaaaaaacagttttagGTGTAGCACTTCCAGAGGAAAGTATGAAAAAGGAACTTCAGACTATAAGGGATGAGATCAAAGTATTAGCTAGCCAAATCCAGAAGAAACTGAAGAATATTGAAATCAAGAAACCCGACGAAGATGGGAAATATGTTCCAATAAACTTAAGAATGCAAAGAACACAGcatGCTGTCCTCTCCCGAGACTTCATTGAGTTGATGGGTTACTGTAACACAATTCAGGCTCAGTACAGAGATAGAAATGTAGAGAGGATACAAAGGCAACTCAAAATCACTGGCTCTaatgtgactgatgaacagttGGAGTCAATGCTAGAGAgtggacagacagatgtgtTCACACAAAATATCTTAATAGATGCCCAAGCCACCAGGCAGGCACTAAATGAGATTGAGTCACGGCATGATGAGATTCTTAAACTGGAGAAAAGCATCAGAGATCTTCATGAAATGTTTCAGTATCTTGCCATGGAAGTGGAGGCACAGgGGGAAATGGTTAATCGTATAGAGAACAACATAGTTAACTCTTCTAACTATGTAGTGAAGGCTGTGGAAGACACAAAGGCAGCTGTTGTATCACAAAACAAGGCCAGAAAGaaaaaaatctggATTGCagtgtgcattttaattttacttttgaTAATAATCATTGCCCTGGCTGTTAGTTTGAGCTGAGATGAGTCCAGTACTATTAAAGGAGGTTTGTACACTTCACCAGATAGAGCAAGATATCATTAAATGAAACTTTAATTCACATTCTctcaaaaacatacacaatgGCTCACGCATCTCCTAATTCCAACTTTACTGACATTTCAGCTTGATTGGCTTATATCTGCTGCATTTCATgtagcatttgtttttttttttttagcattaaaaatcttatttatagattaactttttttaattggacCCACATATTTCTCCCTTTGCAGCGTTCTGAAATGTATCTCTGAAATTAGGTGACCCTTTCTGTAACCAGTATCTATACAACGGCTCAAACATTCTTAACATCCTTGATTTCTGCAGTCATTTTTTACGGTTTGAACAGAGATTGGAGAATCCATTTCTGGATCCAAATTCCaagatctagtggaaagccttcctggAAGAGTAAAGGATGtgatagcagcaaagggggaacaacTCTATTAATTCCCATGggtttggaatgggatgttcacatatgggtgtgatggtcaggtgaccacatatttttggccatatagtgtacatacagGGGAAAACAATTTAAAGTGTCTTATAAATATAGTGTCTTATTTAAAGTGTCTCATAAAATTTTGAGCCACCACAACCCTAAAGGATGAAAGACCACTGTTCTAAAACATATTCCCTTAAACATATTCCCTtagatgatggtggtggagagtaCTGTTTAACATATCAGTCCAAAAAATCccatttttcatatatttgtcAGACCTGAGCAGCTCAGATTTAAAAAGACTGATGTGTTACTTGTACAGTGAAGTAttcttaaatattattattgttgttaataatTTGTATTATTTCCCCCTCTTCCCCCAGTGTCCTCCTTCTGCTGGTCTCCTATGCTTTGCATTTTAACAAATTATGTGTAGATGACACAAACCTGTTTTTCACTAGCCACGGTCTCTTCAGCTCTTCCAAGTTAACGATTAATGGCCTTTTGGCATAGAGATGAACACTCGTTTCGAAACTGTTCTGCAATATGATGAATAAGGATcacataaacagtttttttttttaaataacagtgaCATAGAAATAACTCTTCTCAGGAAACCCCAAATGATAAAACAGAGTTTTAATATATAAAGCATACAGAAGAACCTCAGAATCACTGTAAGATATATGAGCTTTGTTTTTATCTTTCTgttgaaaatattatttgttagTATTGTGTTCATTTTGACACTATGTCAGAGAAGAAATTTCTAAAGCTTATGTTACGTCTGTATATACACAAACTAATCTTTTACgtctttgcttttattttacagtatctgctcctgaaatattaattactgTCATTTTCATGTCATAAGATATATGTACTCTTTACCTAATCACAGCTCTTCATGTAGTTCTGTAGTGTGAGCTGCCCTCTACCGTGGAAGCTAGGCAGTAGaaattgttcattaattaagtaacacactaaaaaaatgtgctgtgtTATTTATTTGGGCCTTGTCTCAAATAGACCATGTAGATCTGCTTTTGAAGCATTTGTTATGTACACTCAGTAACTTTCTAGTGCCTTTGCCTTATTAATTGAGGCCTAATTAATTTCGATCTGTATGAATTTAGTGGCAGGTAATATCAGAGTACTGCAGTATTTTGGTGCATGATGTGGTGTCATTTTGTACTGAACTACCTGTAATTTTAATACAGAactgttgttttaaaataaaatgcatcttATACTAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K13502 STX4; syntaxin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 78162 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 209245 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 250376 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 336802 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 361174 11093163 ~ 11096178 (+) True G194293
TU230527 lncRNA downstream 126851 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 131489 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 148348 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 252856 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 572462 12038503 ~ 12038728 (+) True G194828
XM_026915492.2 mRNA upstream 2374 11448658 ~ 11454978 (+) False si:dkey-220f10.4
XM_034309062.1 mRNA upstream 2375 11448658 ~ 11454977 (+) False si:dkey-220f10.4
XM_026915491.2 mRNA upstream 2376 11448658 ~ 11454976 (+) True si:dkey-220f10.4
XM_026915057.2 mRNA upstream 18124 11431921 ~ 11439228 (+) False arsg
XM_026915391.2 mRNA downstream 118 11466159 ~ 11471967 (+) True calcoco2
XM_026915390.2 mRNA downstream 130 11466171 ~ 11471967 (+) False calcoco2
XM_034309457.1 mRNA downstream 171 11466212 ~ 11471967 (+) False calcoco2
XM_034309372.1 mRNA downstream 11807 11477848 ~ 11482047 (+) True msl1b
XM_026914838.2 mRNA downstream 20582 11486623 ~ 11497065 (+) True fbrs
trnaq-cug_16 other upstream 171084 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1392726 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1822285 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1943517 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1944721 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 1006642 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2017260 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2017260 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5389729 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6111242 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile