RNA id: XM_034309543.1


Basic Information

Item Value
RNA id XM_034309543.1
length 7820
RNA type mRNA
GC content 0.51
exon number 45
gene id sdk2b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 26285674 ~ 26426786 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCAGCTCATAGCTCCATCATCTCTGGAGTTTTCCTCTCCATCTTCTGTCCATCTTCTCCCCATCTTCTGTCCATCTTCTGTCCATCTTCTCCTCTTTCGGTGTGGGATGTAAAGGCAGCGCGGCGCTTTCTTCAGCTTTGCGCCTTTGTGTCTGGAGCCTCTGATGGTGAGGGTTCGGGAAGAGCGCAGAGGAGGAAAGTTGCTGAGATCTCGCAGGGCGGAATCTGAGCAGCTGTGGATTGTGGAAGTCTGGTTCTTCTGGGGTTTGTTATTAAAAGTGAGTGATGATTCGAGCAGTGTGAAGACTGCTGGCGGGGAGAAGCGCTCAGAGCTGCGGGAGAACTTCAGCTGGATGCGGGAGGTGTGATTCATTTCCTTTCGCGTCTGATCCACCGGACATTCTGACGTCACAgagagataacacacacacacacacacacacacacactgaagcagataataaactgtaaaagtgtACCTGTGCTACACACTGAACTGTACTGAACCACGTGACCGCTCGTGcttcctgaagatgaagatgatgatgaagatgaagtaATTATTGTTAATGGTTAATTCATCACAGttctaaaagtgtgtgtgatggagtgtgttacactgaCTGACTGTGAGGAAGTCCCGCTCTTTtggatttaacacacacacacacacacacacacacacacacactcacacacacacactcacacactcctgtataGTGaaggatacacacacagaagcacaaGATGATGAGACTAACGTGTGTGTTACTGGTTCTGCTTTTCCACTACGGAGCTGCTCAAGATGATGTCCCCCCGTACTTTAAGACTGAACCGGTACGTTCTCAGCTCCACCTGGAGGGGAACCGGTTGGTTCTCACCTGTATGGCAGAGGGTAGCTGGCCGCTCGAATTCAAATGGATTCACAACACCACTGAGCTCACGCCGTTCTCCCTGGAGtacaggtaTCTGATCCCCTCTCTGGATCGGACTCATGCTGGTTTTTATCGCTGCATTGTGCGGAATCGAGTTGGAGCTCTGCTGCAGCGCAGGACGGAGGTGCAGGTGGCCTttatggGTGCCTTTAATGACACTGTGAGGTCTGAGAGTGTGTCTCAGGGAGATGCTGCTGTGATTAAAGCTCCGCAGATCCACAGCTTCCCTCAGCCGCAGGTCACATGGTTCCGAGACGGCAGGAAGATTCCACCAAGCAGCCGCAttGCCATCACTCTGGATAACACGCTGGTCATCCTCTCGGCTGTGGCTCCAGATGCTGGACGTTATTATGCTCAGGCTGTAAATGACAAGAACGGGGAGAATAAGACAAGTCAGCCAATCACACTCACTGTGGAGaaTATCGGTGGTCCTGCAGACCCCATCGCTCCCTCCATCGTTTTCCCCCCCAGGAACACAAGTGTTGTTTCTGGAACCTCAGAGGTCACCATGGAGTGTGTGGCCAATGCCCGgccGTTGATAAAGCTGAGTATAAGCTGGAGGAAGGACGGTGTTCCTGTCCGTTCAGGTCTGAGTGACTTTAATCGCAGGTTGACCCTCCTTAGTCCCACCATCACCGATTCAGGATTTTACGAGTGTGAGGCAGAGCTGCGGAGCAGTAGCGTACCGTCCGTTAGTGCTGGAGCATTTCTGCATGTGCTGGCCCCACAGTTTGTGAAGGAACCAGAGAAGCACATCACTGCTGAGATGGAGAAGGTGGTAGACATTCCTTGCCAGGCAAAAGgcGTTCCCCAACCTGATATTGTGTGGTATAAGGATGCAGTTCCCATCAGTCCATTGAAGAATCCTCGTTATCATGTTCTAGCTGGTGGGAGTCTCCAGATTAATGGCCTTCTGCCTGATGATACTGGAATGTTCCAGTGTTTTGCTCGCAATGCTGCTGGAGAAGTGCAAACCAACACCTACCTTGCCGTCACcaGTATTGCACCGAACATCACGGCAGGTCCATCAGACAGCACTGTGATTGATGGGATGTCAGTCATTTTGCACTGTGAGACGGCAGGAGCTCCACGGCCTGCTATCACTTGGCAGAAAGgtgagcgTGTATTAGCAAGTGGATCGGTCCAGTTGCCCCGCTTCACTCTGTTAGAATCGGGCAGCCTTTtgataagccccgcccacttatCTGACTCAGGTAGATACACCTGTACTGCAAGCAACTCACGTGGCATTGACCAGGCCTCAGCACACCTGGGGGTGtgggcTCGTACTCGTATCTCCACCCCACCTCAGGATCAAAGTGTAATTAAGGGCACTAAAGCCACCCTGACCTGCGGAGTGTCTCATGACCCCAGTGTTGCTgtcaggtttgtGTGGGAGAAGGATGGTCAGGTGATTAACCCCAGGTCGTCACCACGGTTACGGCTGGACACTAACGGTACGTTACACATCTCTCAGACGTGGTCAGGTGACATTGGAACCTACACCTGCAGAGTGACATCACAGGGAGGAAACGACTCTCACAACGCTCACCTGAAAGTCAGGCAGTTGCCTCACGCCCCAGAGAACCCAAGTGCCATATTGAGCTCTGTGGAGAAGAGAGCCATCAACCTGACGTGGGCGAAACCCTTTGACGGAAACAGTCCCCTCATACGCTACATACTTGAAGTGTCCGAgaacaatgctcCGTGGATGGTTCTCATAGCGGATGTTGACCCCAGTTCCACAGCACTGACAGTGAGGGAACTGACTCCGGCTCGGTCCTATCAGTTTCGCTTGTGTGCTGAGAACAATGTGGGGAGAGGAGCCTTCAGCACTGAGACAAGACGcgtgtcTCTCCCAGAGGAGCCCCCCAGCGCACCCCCGCAGAACGTGATCGCTAGTGGCCGTACCAACTCGTCCATCATGATCCAGTGGCAGCCTCCCCCTGAGAATCAGCAGAATGGCGCGCTCCGGGGATACATCATACGTTACCGTCTAACTGGTCTCCCAGTGGACATCCAGTACAAGAACATCTCCAATCCCGAGGTGACCAACCTGCTCTTGGAGGATTTGATCATCTGGACCAACTATGAGATAGAAGTGGCGGCATATAACGGCGCTGGACTGGGAGTCTACAGCCACAAAGTGACGGAGTGGACACTACAGGGAGtcCCTACTGTTGCTCCAGGTGATGTTCAGATAGAAGCTGTAAACTCCACCACCATACGCTTCACCTGGACTGCACCCAATCCTCAGTTCATCAACGGCATCAACCAGGGATACAAGctcttaGCGTGGCAGGCGGGGCAGGGGGAGGAGCTTACAGTTGTTACGGTTCGGCCGAATTTCCAGGATGGTGTCCACGTCGGCTTCATCAGCGGCCTAAAGAAATTTACAGAGTATTTCACATCAGTGCTGTGTTTCACCACACCGGGGGATGGACCACGCAGCCCTGCCCAGAGAGTACACACCCATgaagacaCTCCCGGTGCTGTTGGTCATCTGAGTTTTACTGAAATCCTTGACACGTCTTTGAAAGTCAGCTGGAGAGAACCGCATGAGAAGAACGGCATCCTCACCGggTACCGTATCTCGTGGGAGGAGTTTAACCGGACGAACACGCGTGTCACACACTACCTGCCCAACGCCACTCTGGAGTACCGCGTCACTGGATTAACTGCGTTAACTACCTACACAATCGAGGTGGCGGCCATGACGTCTAAAGGACAGGGACAGCTGTCATCATCCACCATCTCATCAGGGGTAccaccagAGCTTCCTGGTCCTCCAACTAACTTGGCTATCTCCAATATTGGTCCTCGATCAGTTACGCTGCAGTTCAAACCAGGTTACGATGGAAAGACCTCCATCTCCCGCTGGCAGGTAGAAGCACAGATCAGTGTAATTGGAGAAAATGAGGACTGGGTGATGGTTCATCAGCTGACTAATGAACCTCATGCTCGATCAATGGAAGTACCTGCTCTCAACCCCTACACCTTCTACAGATTTCGTATGCGTCAGGTGAATATTGTGGGCACGAGCCCACCCAGCCAACCTTCTAGAAAGATCCAGACCCTGCAGGCTCCACCTGACATGGCTCCACTTAACATCACACTGCGCACAGCCAGTGAAACCAGCCTCTGGCTCCGATGGGTGCCCCTGCCAGAGTGGGAGTATAATGGAAATCCAGAGTCTGTGGGTTATAAAGTGCAGTATAGTCAGATTGGACCTCAGGCTAAGGTCCTAACCCACGTTATTCTTGACCGTTTGGAGAGGGAGTTTACCATTGAGGATTTGGAGGAATGGACCGAATATGAGGTCAAAGTCCAAGCGATTAATGGCATTGGAGCTGGACCATGGAGCCCACCTGTTCGAGGACGGACCCGAGAGTCTGTGCCCTCCTGTGGTCCGTCTAATGTCTCAGCTTTCTCCACATCCTCCAGCAGTATTCTGGTTCGCTGGTTTGAGGTTCCTGAGCCTGACAGAAATGGTCTCATCCTTGGTTACAAGgTGGTGTATAAAGAAAAGGATTCAGACTCTCCTCTTCAGTTTTGGACAGTAGAAGGAAACACCACTCACAGTGCTGAGTTGACAAATTTGGGGAAATATGTCCTCTATCAGATACAGGTTTTAGCGTTCACACGTATCGGAGATGGACTCCCATCCACTCCTTTGATCCTGGAACGCACTCTCGATGATGTGCCTGGACCTCCAGTTGGTATTTTGTTTCCGGAAGTACGAACCACTTCTGTCAGGCTGATTTGGCAATCTCCTGCTCAGCCCAATGGTATCATTCTTGCCTATCAGATTGCCTATCGTCTAAATTCATCCAATAGCAACTCAGCGACAGTGGATGTGCTGAATCCGAGCGCACGGCAATACACAGTGAACTCGCTAAAACCTGAATCTGTTTACATATTCAGCATCACGGCTCAAACACGCAAAGGCTGGGGAGATTCAGCCGACGCCCTGGTGGTCACCACAGAAAAGAGAACACGACCCCAGCCTCCTCGCCATCTCGTGGTGCCTCAGGAAAGCGTGCGAGCACGAAGCGTACTGTTGTCATGGGAACCAGGCAGTGATGGTCTTTCTCCAGTCCGGTATTACACAGTTCAGATCAGAGAACTTCCTGATCAGAACTGGACTGTCCAATCAGCATCTGTCAATCACGAGGTGGTGCCATACACTGTGGAAAGaTTGAAGCCCTTCACCTCATATCAGTTTCGTGTAAAAGCCACTAATGATATCGGAGACAGCGATTACAGTGAGGAGAGTGAAGCCATCACCACTCTGCAGGATGTTCCTGATGAAGCTCCCATCATCCTCTCTGTTACTCCTCACACCACTACATCTGTTTTAATTCGCTGGCAGtctcCATTGGAGGAGAAGATTAACGGGATTCTACTCGGGTACCGTATTCGTTATCGAGAGCTACTTTACGAAAGATTACGAACTTTTAACATCCAAAAACACTCTAGCTGGACCGAACTGACATATCCGTACAGTATGAGGAACCTCAGTGAACCATCCCTCAGCCAGTATGAGTTGGACAatctgAGCAAACACAAGCGTTATGAGATCagaatgagtgtgtttaatgCGGTGGGAGAAGGACCAGTCAGCTCACCACAGGAAGTGTTCGTTGGGGAAGCAGTACCCACAGCACCACCACAAAATGTTGCCATCCAATCAGCTACTGCGACACAGCTGGACGTGACGTGGGACCCGCCCCCTTTGGACAGGCAGAATGGAGACATACAGGGCTATAAGGTATATTTCTGGGAGTACAAACGTAAGAACGAGACTGAGAAGTTAAAGACACTTTTTCTGCCTGATGGAGGAGTGAAGCTGAAGAATCTGACCGGTTTCACCACCTACATGATCAGCGTCGCTCCCTTTAACGCTGCTGGAGATGGACCACGCAGCCCACCCACCAGGGGGCGCACTCAGCAAGCAGcaCCCAGTGCTCCGAGTTTTATCCACTTCAGTGAACTCACCACCACGTCTGTGAACGTGTCGTGGGGAGATCCAGTTTTCCCCAATGGGATCATTGATGGTTACCGCCTCGTGTACGAACCCTGCACCCCCATTGATGGTGTGAGTAAGATAGTAACAGTGGATGTGAAGGGAAATGCCCCACTGTGGCTGAAAATCAAAGACCTGGTTGATGGAGTTACCTACAACTTCCGCATCCGTGCCAAGACCTTCACCTATGGGCCTGAGGTGGAGGCTAACATCACCACCGGCCCTGGAGaagGTGCCCCAGGGCCTCCTGGTGATCCATTCATCTCTCGATATGGCTCTGCCCTCACTATACACTGGACCAGTGGAGATCCTGGAAGATCCCCTATATCACGATACGTCATAGAGGCCAGACCCTCAGaTGAAGGCCTGTGGGACATTTTGATTAAGGATATTCCAAAGGAAGTGACATCATACACATTCAACATGGATATCCTGAGACAGGGGGTGAGCTATGACTTTCGAATCATCGGAGTGAACGACTATGGATACGGATCTCCGAGCCAACCTTCTCCTTCCGTATCAGCTCACAAGGTGGCTCCGTTCTACGAGGAGTGGTGGTTCCTGGTAGTGATGGCGTTGGTTGGTCTGATCTTCATACTCCTGCTGgtcttcatcctcatcattAGAGGACAGAGCAAGAAATACGCCAAAAAAGAGATCGGTAACAGCCCGAACTGTACCACTCTGACCCATGGAGAAATGGTGGGACTGGACGAGAGTCATTTTCCTGCGCTGGAACTGAACAACCGCCGTCTGTCCGTCAAAACCTCCTTCAACCGAAAGAATGGCATCTACACAAGGTCTCCTCCTAGGCCCAGTCCCGGCAGTCTGCACTACTCTGATGAAGACATAAACACTAAATACAGCGACCTGATTAAAGCCGAGAGCAGCAGCTTAACTGAGAAAAAATCAGAGCTGTCTGAttcacagggCAGTGATAGTGAGTGTGAGGTCGACGCCACCCTTCAGAATCAGACGCACTCATTCGTTAATCACTACATCAGCGACCCCACTTACTACAACTCGTGGCGTCGACAGCAGAAAGGAATCTCCAGAGCTCCGCCTTTTGcctacagccaatcagaacctACTGAGGCCACTCCCACTACCGGTCCTGCCTCCACTCCAGCCACACCCCCAAGCCCCGCCCACGCCGAGCCTCAGAGCCTCTTCAGACCCAAAGGCAGTCGGACTCCCACTCCGTCACAGCAAAGCACCGCCCACTCCACTCTGTACCGCCCACCCAGCAGCTTGGCCCCAACAGCTACACCCCGCCCACCCAGCAGCTTGGCCCCACCCACCACGCCCCGCCCACCAATCGCCGGCTTTTCCTCCTTTGTCTGATTGGCGAGTCAAAGTGACTAGAGCTGTGTTATAATAATTCTCCTCTTACTACAAGGTCGGCCATTTCCAGGCTCCGTCTCAGACACAGTCCACTTCTCAGTTTTCTTACTAGAGAATCTTTTAAGGCTTCGTCCTAAATGAGAAGGTCTAGTTAGCATTCTTATTAATATGTCTGACATTATATGGTTCTGTCCTAAACATTAGAATTTTTATTGTTCTTGTTGGAACATTTTTAGGTTGTCTCAAACAGAAGAatttacactcaccatccagtttaataggaacacctgtacacctgctcgcttatgcagttatccaatcagccaatcatgtggcagcagcactatgcaatcagccaatcacgtggcagcagcacatcaAACATCGGAATGAAGACGTGTGATAtttgtgactttaaccgtgacatggttgctggtgccagatgggctagtttgagtttttcagaagctgctgaatcctgggaatttcacacacaacagtctctagagt

Function

GO: NA

KEGG:

id description
K16353 SDK; protein sidekick

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240017 lncRNA upstream 77881 26204658 ~ 26207793 (+) True G202761
TU240018 lncRNA upstream 77881 26205345 ~ 26207793 (+) False G202761
TU239757 lncRNA upstream 147860 26118724 ~ 26137814 (+) True G202593
XR_004579260.1 lncRNA upstream 221389 26059624 ~ 26064285 (+) True LOC117598627
TU239722 lncRNA upstream 251859 26033140 ~ 26033815 (+) False G202567
TU240082 lncRNA downstream 5710 26432496 ~ 26432699 (+) True G202813
TU240093 lncRNA downstream 79317 26506103 ~ 26524105 (+) True G202824
XM_034309306.1 mRNA upstream 279849 26000353 ~ 26005825 (+) False LOC117598538
XM_034309305.1 mRNA upstream 280705 25999651 ~ 26004969 (+) True LOC117598538
XM_034309303.1 mRNA upstream 280705 26000353 ~ 26004969 (+) False LOC117598538
XM_034309304.1 mRNA upstream 280705 26000353 ~ 26004969 (+) False LOC117598538
XM_034309310.1 mRNA upstream 303967 25975031 ~ 25981707 (+) False lrrc20
XM_034309447.1 mRNA downstream 63 26426849 ~ 26429873 (+) True LOC117598613
XM_034309448.1 mRNA downstream 10257 26437043 ~ 26444597 (+) True LOC113547530
XM_034309449.1 mRNA downstream 10257 26437043 ~ 26444597 (+) False LOC113547530
XM_026947812.2 mRNA downstream 91204 26517990 ~ 26526734 (+) True LOC113547461
XM_026947821.2 mRNA downstream 112453 26539239 ~ 26546663 (+) True ndufb8
TU239496 other upstream 783046 25498180 ~ 25502628 (+) True G202374
TU239521 other upstream 786755 25497715 ~ 25498919 (+) True G202397
TU239415 other upstream 931384 25329209 ~ 25354290 (+) False dupd1
TU239119 other upstream 1620149 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 1903387 24381787 ~ 24382287 (+) True G201962

Expression Profile