RNA id: XM_034309547.1


Basic Information

Item Value
RNA id XM_034309547.1
length 5283
RNA type mRNA
GC content 0.54
exon number 35
gene id top2a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2347045 ~ 2361095 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgTCCTGGCGGGAGGATGCGCTGCGTTCGGtttgaaattttaaaagaaCTTGAGCTCGCGCTGGAGCAGTTACTCGGCGTTCAGTTTGAGGAAGGGCCATTAAACAGCAGCAAAACTAGTTAAAATAGGTccaaaacttatttttttatgggTTTTTAGGTGTAATTTAGCAGAAGGAAGTTTATAGGTTGTGGACTGGCAGGTTAGCGTTTAAATTGTTGAATAATTGAGGAATAATTCGACGTTAAAAGGCAAGTCCGACCCACTGAGGTGAATAAAATGGCTGCGACGGAGGGACCTTTGAAGGCTTTGTTTGAGAACAAGACCCTGAGCAAGACGAAGAAGGATGAGAAGCGTCTCTCCGTGGAGCGCATCTACCAGAAGAAGACGCAGCTGGAGCACATCCTGCTCCGGCCGGACACCTACATCGGCTCTGTGGAGCCCGTCACGCAGCAAATGTGGGTGTTCGATGAAGTGGTAGGGATGAACTGCAGGGACGTCACCTTTGTTCCCGGCCTCTACAAGATCTTCGACGAGATCCTGGtcaATGCTGCGGATAACAAGCAGAGGGACAGCAGCATGAACTGCATCAAGATCACTGTTGACCCAGAGAACACCACCATCAGCGTCTGGAACAATGGGAAGGGCATCCCAGTGGTGGAGCACAAAGTGGAGAAGGTGTTCGTGCCGGCGCTCATCTTCGGCCAGCTCCTCACCTCCAGCAACTACGACGACGACCAGAAGAAGGTCACGGGTGGCCGTAATGGATACGGCGCCAAGCTGTGCAACATCTTCAGCACCAAGTTCACCGTGGAGACGGCGTGCCGCGAGTCCAAGCAGTGCTTCAAACAGACGTGGTATGACAACATGGGCCGCGCCGGCGAGGCCAAAATCAAGCCGTTCAGCGGCGACGACTACACCTGCATCTCCTTCCAGCCCGATCTGTCCAAATTCAAGATGGAGACTCTGGACCGCGACACGGTGGCGCTGCTGACGAGACGTGCGTACGACATCGCCGGCTCCACCAAAGGCGTCAAGGTGTACCTCAACAGCACCAAGCTGCCCGTGAGCGGGTTCCGCAGCTACGTGGACCTGTACGTGAAGGACCGAACGGACGAGACGGGTTCTCCTCTCACTGTAGTGCACGAGATGGTGAACCCGCGCTGGGAGGTCTGTCTCACCATGAGCGAGAAGGGCTTCCAGCAAGTCAGCTTCGTCAACAGCATCGCCACCACCAAGggtggCAGACACACAGACTATGTGGCCGACCAGATCGTGTCCAAGATGATCGAGGtggtgaagaagaagaacaaaggCGGCGTGGCAGTCAAGCCCTTCCAGgtgaagaaccacatgtggctGTTTGTGAACTGCCTGATCGAGAACCCCAGCTTCGACTCGCAGACCAAAGAGAACATGACGCTGCAGCAGAAGAGCTTCGGCTCCACCTGTACACTCAGCGAGAAGTTCATcaaaCAGGCGAACGGCTGCGGCATCGTGGAGAGCGTGATGAACTGGGTGAAGTTCAAAGCTCAGACTCAGCTCAACAAGAAGTGCTCGGCTGTCAAGCACACCAAGATCAAGGGCGTGCCCAAACTGGACGACGCCAACGACGCAGgtggtaAGAACTCGGCCGGCTGCACTCTGATCCTCACTGAGGGAGATTCGGCCAAGACCCTGGCCGTGTCTGGACTCGGTGTGGTGGGCCGTGATCGCTACGGCGTTTTCCCCTTGCGTGGAAAAATGCTCAATGTGCGGGAGGCCTCGCACAAACAGatcATGGAGAACGCCGAGATCAATAACATCATCAAGATCCTGGGTCTGCAGTACAGGAAGAACTACAGCGACCCCGAGTCGCTCAAGACGCTGCGCTACGGCAGGCTCATGATCATGACAGATCAGGATCAGGATGGCTCCCACATCAAAGGGCTTCTCATCAACTTCATCCACCACAACTGGCCCTCGCTGCTGCACCACAACTTCCTCGAGGAGTTCATCACTCCCATCAtcaaggcGTCGAATAAGAAGCAGTCGCTCTCCTTTTATAGCATCCCGGAGTTCACCGAGTGGAAAGAGAAGCAGAGCAACCTGAAATCATGGAAGATCAAGTACTACAAAGGTTTGGGTACCAGCACAGCCCAGGAGGCTAAAGAGTATTTCTCGGACATGGCGAGACATCGCATCCCGTTCAAATACTCAGGACCTGCCGACGACGAGGCGATCACCCTTGCCTTTAGTAAGAAGAAAGTGGAAGAGAGAAAGGAGTGGCTCACCAGCTTCATGATCAACAGGCGACAGCGCCGGGAGCATAACCTGCCCGAGgagtATCTGTACGGGAAGGAGACCACATCGCTCACCTACCACGACTTTGTTAACAAGGAGCTGGTGCTTTTCTCCAACTCGGACAACGAGAGATCCATCCCGTGTCTGGTGGACGgtctgAAGCCGGGTCAGAGGAAGGTGGTGTTCTGCTGCCTGAAACGGAACGATAAGCGTGAGGTGAAAGTGGCCCAGCTCGCCGGTTCTGTGGCCGAGATGTCGGCTTATCACCATGGAGAGacgtCTCTGATGATGACCATCGTGGGTCTGGCACAGAACTTTGTGGGCAGCAACAATCTGAACCTGCTGCAGCCTCTGGGGCAGTTCGGTACACGCCTTCACGGAGGCAAAGACTCGGCCAGCCCCAGATACATCTTCACCATGCTCAGtccTCTGGCTCGGCTGCTTTTCCCTGCTGTGGATGACAACCTACTCAAGTACAACTACGATGACAACATGCGCGTGGAGCCCGAGTGGTACGTTCCCATCATCCCTCTCGTTCTGGCCAACGGCGCCGACGGCATCGGTACGGGCTGGGCCAGCCGCCTCCCCAACTATGACGTGCGCGAAATCGTCAACAACATCCACCGCATGCTCGACGGCCACGAGCCTCTGCCCATGTTGCCTAGTTATAAGGGCTTTAAAGGAACCATTGAGGAGCTGACCACCAACCAGTACATGAACAGCGGTGAGGTGGCCATCCTCGACTCCACCACCATCGAGATCTCAGAGTTGCCTGTAAAAACCTGGACTCAGACGTACAAGGAGAACGTGCTGGAGGTGATGCTGAACGGCTCTGATAAGGCGCCCGCTCTGATCACGGATTATAAAGAGTACCACACGGACACCACGGTGCGCTTCGTGGTCAAAATGACGGAGGAGAGGCTGCGCGAGGCCGAGGCCGCGGGCCTGCACAAAGTCTTCAAGCTCCAGAACCCTCTCACCTGCAACTCCATGGTGCTGTTTGACCACGTGGGCAGCCTGAAGAAGTACGAGACGGTGCAGGACATCGTGAAGGACTTCTTCGAGCTGCGTCTGAAGTACTACGTGCTGAGGAAGGACTGGCTGCTCGGCATGCTGGGAGCCGAAAGCGCCAAGCTCTCCAACCAGGCACGCTTCATTCTGGAGAAGATCGAGGGCACGCTCGTCATTGAGAACAAGCCCAAGAAGGAGCTGATCCGCATGCTGCAGCAGATGGGCTACGACTCGGACCCTGTGAAGGCCTGGAAAGAATCTCAGGAGAAGGACATGGAGGAAGAAGCAGGTGACGAAgatgaggagaaagaaaaagaggaagagacgTCGGGACCGGACTATAACTACCTCCTGAGCATGCCCATGTGGTTCCTCACTAAAGAGAAGAAAGAcgagctgtgcaagcaaagagATGCAAAGATGAACGAATTGAGTGTTTTGAAGAGGAAGTCTCCTTCAGATCTGTGGAGGGAGGATCTCGCTGCCTTTACTGAGGAGCTGGAGCGTGTGGAGCAGGCCGAGCGAGCCGCCCAGGCCCCAATCACCCAGGTCAAGGTCAAAGGGGGCAAATCGAAGGTGGTGAAGATGAAAGACGAGACCAGGCCCACCCCTCAGGGCCGCCGCGTCATTCCTCGCATCACCAGTGCCATGAAGGACCAGGCCGTCAAAAAGGGCGGAGCCAAGAAGGGCAAagtcaagTCTGAGAGCGACGGCAGCGTGGTGATGAAGATGGAGTTCGGCGATGAGGACGCTGAAGCAGGAGACTCTCAGGAGATGGGACTTGCTGCTCGTCTCACCAAAAAGGTCAAGAAGGAACCCAAGGAGAAAGgttCTAAGTCAGGGAAGCAGACCACGCTGCAGTTTAAACCTGTCAagatggagaaggagaagaagaagaagaagaacccaTGGTCATCTGACGAGGACGAGACCGGGGCAGAAGATTCAGACGTGTCCTCGAGTGCAGGCGATGTAGCTCCCAGAGAGCGGCTGGGCAGAAAAGCTAACGccGCTGTTAAGTACTGCCTGTCTGACAGTGAGGATGAGTCTGGGACCTGGGAGAGTCTGGGTAAACAGAAAGCTCCAGCAGTTGCTGaagatgatgacgatgacgacAACGATGACATTTTTGTCCCAGAACCCAGCGCTATATCTGAGAGTGAGCAGGACTCACCTGCCCCGCCTCCACCGAAAAAAACTGTGAAGAAAGCAAAGGAAAGCAAAGAGGCAGTGAAGAGCGCACTCACCTCTGACAGCACTGCTTCTAAACCGCCGCCCAAGCCCAAAGAGAAAGCGGCGAAGAAAGCAGCCGATGGCGCCGCAAAGAAACCCGCAGCGAAGAAGGCGACCGCTGCCTCCAAAAAGAAAGGAACCGCGACAGATGTCAAGCAGCCATCGATCCTCGACGCGCTGTCCAAACCCACAACCGCTAAAAAGAGCATGGCCACGAAGATGGCGACGTCCAGCGAATCCGAAAACTCCGCCCCCGCACCAGCAGCCAGAAAAGCAGCCGTGCAGAAGAGGAAAGTGGCACTGAGCAGCGACGAGTCAGACAGCGACTCGGATGGAGGAAACCTCATGGCCCGCCTCAAAGGCAAAGCCACAGCTGCAGGAAAGAAAAGTAAGTGGGACGATGACGACAGCTTTTCTTTGGACTTGACGTCCTCCGCCGTGGCACCGAGAAGCAAAACGGCACGCAACACAAAACCAGTCACCTACATGCTGGACTCGGACTCGGACGATGACTTTTAGAGTGTTTCCCTCCACCTCATGGTACTAGAATGAAGCTAAcgttgtaaatatttttaaaaactttcagttttatttccttttacagCCATTCAGTATCGCATTTTGAAACTTCTGaaaaattctaatatttatgtGGAAGATTTTTGAAGTGCTCGAGAAACTATTTGTCTGTTGTCTtgtaaatattttctattaCCTTTTTCTactatatttttcaaaaataaacttTGCCTATGA

Function

GO:

id name namespace
GO:0006312 mitotic recombination biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0030261 chromosome condensation biological_process
GO:0031100 animal organ regeneration biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006265 DNA topological change biological_process
GO:0000795 synaptonemal complex cellular_component
GO:0009295 nucleoid cellular_component
GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex cellular_component
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224401 lncRNA upstream 28738 2317318 ~ 2318307 (+) True G189570
TU224394 lncRNA upstream 37627 2308226 ~ 2309418 (+) True G189563
TU224386 lncRNA upstream 51740 2295086 ~ 2295305 (+) True G189555
TU224296 lncRNA upstream 201289 2143152 ~ 2145756 (+) True G189477
TU224099 lncRNA upstream 406789 1939952 ~ 1940256 (+) False LOC117598558
TU224528 lncRNA downstream 163961 2525056 ~ 2528820 (+) True pyyb
TU224489 lncRNA downstream 230143 2591238 ~ 2609497 (+) True G189626
TU224549 lncRNA downstream 244788 2605883 ~ 2608078 (+) True G189678
TU224557 lncRNA downstream 253602 2614697 ~ 2615755 (+) True G189684
XR_003404829.2 lncRNA downstream 280746 2641841 ~ 2644184 (+) True LOC113547470
XM_026947910.2 mRNA upstream 42758 2302233 ~ 2304287 (+) True LOC113547531
XM_034309182.1 mRNA upstream 59991 2270632 ~ 2287054 (+) False lrrc3ca
XM_026947897.2 mRNA downstream 32981 2394076 ~ 2486796 (+) True raraa
XM_026947899.2 mRNA downstream 105563 2466658 ~ 2486796 (+) False raraa
XM_034309326.1 mRNA downstream 128714 2489809 ~ 2502830 (+) True mki67
XM_034309328.1 mRNA downstream 128714 2489809 ~ 2502830 (+) False mki67
XM_034309330.1 mRNA downstream 128715 2489810 ~ 2502830 (+) False mki67
TU223925 other upstream 681708 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2126677 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 399598 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 609030 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 609030 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 877349 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1040172 3401267 ~ 3405009 (+) True G190212

Expression Profile