RNA id: XM_034309574.1


Basic Information

Item Value
RNA id XM_034309574.1
length 1714
RNA type mRNA
GC content 0.49
exon number 8
gene id si:dkeyp-118b1.2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2606033 ~ 2615766 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTCCGATCGACTCTCTCTCCAGCAGCAGGATCGATTACTCAGGCCTGAGTGCGGTGGAGAATGGAAGTGAGCGCACGCGATGTCGCTGTTTAAAGCCGCTTTTATAAATCTGTGAAGTTAGAGAGGAGAGATTTGTGGCTTCTGCGGTGTTTGAAGCGCGTGTCTGCGGCTGGATGCGCGCGGGGTTCCGGGTTACAGGGCAGATGCTGGGCAGATGagcggcagcagcagcagcagcagcagcagcaggactCACAATAACAGGCGGCCTTTCTGCAGAAGCCCTGTGCTCCAGCATGTAGACGCCTCCTCCTGTAGTCTTCGCCAATGAAAATGGAGGAGACGGCCCTGTCCGGCATGGACAACAGCaaaatggagGGCATTGCTCAGGAGATCCTCTCCGATCTGGTGGAGGACGCATGTCTGGGGCTTTGCTTCGAAGTTCACCGGGCCGTCAAGCAAGGCTACTTCTTCCTGGACGACACGGACCAGGAGAGCATGAAGGACTTCGAAATCGTGGACCAGCCCGGAGTGGACATCTTCGGCCAGGTGTATAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGCAGCCGGAGCATCGCCGCCTCGCGCTTCGCCCCTCACCTGGAGAAGTGCCTGGGCATGGGTCGCAACAGCAGCCGCATCGCCAACCGCAGGATAGCCAGCGGCAACAACACCAACAAATCCGAGAGCGATCAGGAGGACAACGACGACGTTAACGACAACGACTGGTCCTATGGCGCAGAAAAGAAAGCCAAGAAGAGAAAGGCAGATAAGGTATTTGTACGTTCTTTCAAACCTCCTGCTCTATCGAATCCAAATTCTCCGAGACGATCCAAAtcactaaaacacaaaaacaCCAAAGATCTGTCTTCGTCCTTCAGCTTCGCTGGATCCTAAGCAGCGCCCAGAGTGAAGTTGTTGCTAGGAGATGGGTTTCCACAGCAACGTCGTCAAGAGCTACCCACAATGCCATGTGGTTCACCATAAGGACGCAGCGAGGAACTAATCGGCGTCGATTCTCCATTCAGTTTACACAACTGTTGtcgtgtttgtttgttttttttttttttttctggaatattTGCACAATAAATCAGTGTCCTTGTGTCGATCGTGTAGCTGCGACCTTCAGCGGGACGTAAACGTGACGTTAACGATCAGCAGGAAGAGTTCAGGGAGGACGGAAGGACACCAGCAGGCAGAAGTAGCTGAACGAAGAGTTACTGATGTACTTTCGTTCCTACTCCTGCTGGAGAAGAGGCGCGATCAAAATCCATCGTAATGCTgcttatttcacttttttgggggtttaatcacatttttttgtgcAGAACCAAGAAGACTGAACTCTATACATTGTGCTTGAACTATGAGCAATTATGATCATGTTATTCTCCCAGAAACTGGACTATTATGGACAATATCTGGCAACTTGAAACACATACATATTCCTCTTTCgagaacgaatgaatgaattctcACGTttctccaatttttttttctttttttttttctttttcttcatctctgTGTAATCGATGTTTACAGTGTAAAGGAATTATGTCTTGGCTGTGTTGTGACTGTACACATATTTGACTCGTTGGGGAAAATGCTGCTACACTGGCCATGAGCCACATGCTTACAGGCATGTCACACACCTAATAAACACGACTCAAtacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224598 lncRNA downstream 1937 2603193 ~ 2604096 (-) True G189717
TU224599 lncRNA downstream 1990 2603193 ~ 2604043 (-) False G189717
TU224575 lncRNA downstream 206557 2394026 ~ 2399476 (-) True G189702
TU224375 lncRNA downstream 325280 2280546 ~ 2280753 (-) True G189547
TU224340 lncRNA downstream 443462 2160630 ~ 2162571 (-) True G189521
TU224700 lncRNA upstream 39538 2655303 ~ 2655507 (-) True G189810
TU224750 lncRNA upstream 79015 2694780 ~ 2701420 (-) True G189855
TU224782 lncRNA upstream 177062 2792827 ~ 2802964 (-) True G189885
TU224779 lncRNA upstream 180742 2796507 ~ 2827807 (-) True G189882
TU224787 lncRNA upstream 182475 2798240 ~ 2798669 (-) False LOC113547504
XM_034309571.1 mRNA downstream 5500 2591412 ~ 2600533 (-) True smarcd2
XM_026947813.2 mRNA downstream 15888 2583781 ~ 2590145 (-) False psmc5
XM_026947875.2 mRNA upstream 2624 2618389 ~ 2638273 (-) True slc4a1b
XM_026947878.2 mRNA upstream 116451 2732216 ~ 2745395 (-) True LOC113547505
XM_034309629.1 mRNA upstream 170316 2786081 ~ 2811391 (-) True LOC113547504
XM_034309351.1 mRNA upstream 197601 2813366 ~ 2827752 (-) True LOC117598559
XM_026947900.2 mRNA upstream 236290 2852055 ~ 2855362 (-) False ndufa4
XR_003404831.2 other downstream 395054 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1034960 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 1040773 1564890 ~ 1565260 (-) True G189180
TU224780 other upstream 177281 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 184311 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 236290 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2283009 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2284201 4899966 ~ 4900037 (-) True trnap-agg_2

Expression Profile