RNA id: XM_034309591.1


Basic Information

Item Value
RNA id XM_034309591.1
length 2376
RNA type mRNA
GC content 0.40
exon number 20
gene id muc13b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9855734 ~ 9869864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGCCCAGAACtgaatcattacacacacaagaGTGTTTAAAGAAACTCTCTGCTGAACATTGATCCTCTCTCCTCTTATTCAACACAGGACTTGCATTATGGCTCTAATTAAAAAAGTCTTGAGCTTATGCTTACTGATTCTGCTTGTGGGTGCAACCACAACTGCTATCACTTCAACTGACTCAGGTGCAACCACAACTGCTATCACTTCAACTGACTCAGGTGCAACCACAACTGCTCCCACTCCAACTGACTCAGGTGCAACCACAACTGCTATCACTTCAACTGACTCAGGTGCAACCACAACTGCTCCCACTCCAACTGACTCAGGTGCAACCACAACTGCTCCCACTCCAACTGACTCAGGTGCAACCACAACTGCTATCACTTCAACTGACTCAGGTGCAACCACAACTGCTCCCACTCCAACTGACTCAGGTGCAACCACAACTGCTCCCACTCCAACTGACTCAGATCCCTGTGCCTCGAACCCTTGTTTGTCAGACAGCACCTGTCAACAGCTCCTGACTaactacatgtgtgtgtgtcgaccGGGACTGTTCTATaatgaaacactgaaattaTGTACTCTAGCAAGGACTTTCCCAACAGATTTAAGATTTCCAGACATGACATATAAAGAAGCAATGAAAGAGAAATCCTCAAAAGAATTCCAAACGATAGCACATGATATTCTTAAAGAGATTAAGGAAGTTTTCAAGGGTAAAAATGGTTATCTTGGATCCACAGTTCTGAGTCTAAACCCAGGCAGTGTCATAGCAGATGTGGAGAATTTCTTCAGTCTTTCGTCAGAAGTTAATAAAACTGAAGTAGAGGAGGCACTAAAGTCAGCAACTGGCACTGGATCTGGGTTTTTAAAAGGCGCTACAGTCGAGCcaagtgacataTGCCGTAGTGGATTCTGTGAAGATTCAAGCACAGTATGTACAGCCGAGAATGGTCTAGCTAATTGCGTTTGCAAGGGCGGATATGTAAAGTTGACAGCAACACAACAGGCATGCTATTCTTGTCCCAGTGGTGAGAAAGCAGTGGGTGATCAGTATTGTAAACCaTGTCCTTTTGGATACTCTGGTTTCAACTGTAAAGAATCGTACCTCTTAATTCTGGTTGTGGTCGCCTGTGTTTTGGGCGTACTTCTTCTCGGCACTCTCATAGGCACTGTAGTCTTGTACACGAGGTCAACGAAAACAACCAAATCTTCAGAAAAAGATACCCCGAAAGGCAATCTGGAGTTCAACAAACCTGCAGGAATTCCCAGGATCCCACGGGTTAACCCTAATACTGGCTGGCAACCAACCAATCTGGAGATGACAGACAGTGGAAGCAGACGTGCCCTGGTCACAAAAGATCGCACAGAGAACACAGCGATGTGGGACTCTGACTACAGTGATGACACAAGGGGCTATAAGAGCCAGATGCCCTCTAGAACAGGATATGGAGCCGCTGGAGCGTATAACGGCTCCAGGGCCTCAAAGAATCCCTACAGTGATGTATATGGGGACAGAATACGCAGATACTAATTTTACAAAAGAGGGCTCCATCTATTGATTTCTTCAGCAGAAATGGTTTGTCTTATAAGAAGGCTGACATTATAGAAAGATGCTATAAAAACATCTGTACAAAAGCCTTAACATTTGAATTATTAGTTGATATGAAGCAAAGCATTAAAGAAAGTCTTTATGCtggacaaaaacaaatgaacaatgtacttgatgtctgtgtgtgtgtctgtgtgtgtttaaaagagCACTAGATAGAGATGGCATGTGCATCCATATGTACATACCTATGATGTGCTAAGTGCTATGTGATCAAATGAATTTAACTTTatctaatttatatatatatatatatatatttttttaatttgttgttagcaaagctttaaaaatcacacatgtggtgaaattaaaaatgaagtaaTTTATTATGTCTAAGATTAAATTGTTGGGAGCTAAAATAAGTTTTTTTAGAGTTATGATCCAGCAGATGTCACTGTTTCATTCAGATTAGGCTTATTCCTTCTATAAATAACTTAATCAGAATTGTTTCTTATGCTGttcacattttttgtgtttttatgatttaaagTTGCCTAGGATTGATCTTAGGTGCAGCCATTTCGAAACAAGCGTAAGTGGTCAGTCAATGACTTTACAATGAAAATGACTGTGGCATTATGTAAATTGTGTACTATATCTGCATTCTAAAggaactgtatataaatatgagCAATCAAGATGATGTGCTGCATTTTATAGTCGATATTGGCTTTTCTCAAAGAGATAAGCTTATgtttaaatgaatcatgaatacacaaagcaataaaaatgactattaataaaagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 28870 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 31266 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 74779 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 190218 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 202474 9652172 ~ 9653260 (+) True G193542
XR_004579148.1 lncRNA downstream 274489 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 354838 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 455092 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 455776 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 463042 10332906 ~ 10336247 (+) False G193828
XM_026914757.2 mRNA upstream 7356 9841383 ~ 9848378 (+) True znf281b
XM_026914984.2 mRNA upstream 69350 9732360 ~ 9786384 (+) True svild
XM_026914985.2 mRNA upstream 69350 9740804 ~ 9786384 (+) False svild
XM_026914753.2 mRNA upstream 126753 9724009 ~ 9728981 (+) True nmt1b
XM_026915890.2 mRNA upstream 132860 9707683 ~ 9722874 (+) False plcd3b
XM_026915689.2 mRNA downstream 14771 9884635 ~ 9903223 (+) True mpp3b
XM_026915690.2 mRNA downstream 14772 9884636 ~ 9903223 (+) False mpp3b
XM_026915691.2 mRNA downstream 14773 9884637 ~ 9903223 (+) False mpp3b
XM_026915714.2 mRNA downstream 39324 9909188 ~ 9915137 (+) False ppp1r3cb
XM_026915713.2 mRNA downstream 41692 9911556 ~ 9915137 (+) True ppp1r3cb
XR_003402888.1 other upstream 220667 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 341899 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 343103 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 343494 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 345938 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 194681 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1416333 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2602819 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3613437 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3613437 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile