RNA id: XM_034309642.1


Basic Information

Item Value
RNA id XM_034309642.1
length 4382
RNA type mRNA
GC content 0.47
exon number 25
gene id itga3b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6546941 ~ 6594390 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgcgcgcgcgcgcgcgacTGAGATTGAGTGCGCACGGTTCCTATGGAGTGTGAGTGAGACTCTGGTCTTGTTCAGAGTGAGACTGAGGGACAGAAGGAGACGTAAAAATGGCTCCCAGCACTCTGCTGCACTTCTGCTTCTGCATAATGTACACCGCGCAAAGCTGTTGTGGATTTAATGTGGATGTCCGCTTCCCGGTTATAAAGGAAGGAAAAACCAAAGGCAGCTTTTTCGGATTCTCCGTAGCGCAGCACAGACTGACGGAAAAGCCCAGGAAGTACCTACTCCTGGCAGGAGCACCCAAAGAGAAAGCCTTATCACAGCTGAAAGTGAACGAGACCGGAGCTATCTACTCATGCCCCATTACCACAGACCTGACAGACTGCACCAGAGTCGACCTCATCACCTCAATGGATTCATCTGAGATGATAGAAGGCATGTGGCTTGGAGTGACTGTAGCCAGTCAAAGAGAGCATCCTGGTGGACGAGTGTTGGCATGTGGCCACCGCTATGTGAAAATAGTGCAGGGTGGAGGAGAGGAACAGCGGCGGATGGTGGGCAAATGCTTCGTCCGGGGTAACGACCTGAGCTTTGACCGCAATGACTTATGGCAGGACCACTCCTATGAAGTGTGCAACCCCAACAAAGACATGGAGATGGAAGGCATGTGTAACATGGGCATTTCCGCCGGCATGACGGACAGCGACGTCTACATCGGCTGCACGGGGAGTTTCGAATGGCAGGGCAATGTGCATGTTACCTGGAGAGACACAACCCCAGACAACTCCTGGGATTACAGTGAAAAAGACTTTGGTTCGCTAAAGAAGCGGAACAGCTACATGGgctACTCTGTGACAGAAGACATGAAGTTGTTGAGCAGAAAAGAGTACACAGTGGTTACAGGGGCTCCCAGAGACGACTCCAGGGGTTCAGTGACGCTGGCGGTGAAAGGGCCTTCAAACCTCGAGCCTGCGCTTGTGATCCCTGGAGAGCAAGTGGGCTCTTACTTTGGGAGCAGTATAGCAGTGACAGATCTCAACAATGACGACTGGAATGACCTGATAGTGGGAGCGCCGTTCTACTTTGACCGCTACAAAGAGCAAGGTGGAGCAGTGTACATTTTCATGAACGAAAACGGATCTTTCCAGATCAAGCCTAGTGTTGTCCTGAACGGTGCCAAGGGTTCTGCGTTTGGATTCTCTGTGGCAGCTATAGGAGATGTAAATCAAGATGGATTCCAAGATTTTGCAGTTGGAGCTCCGTTCCATGATTCTGGGAAAGTCTATATATGGATGGGGAACAAGGAGGGAATAACAAATGTTCCCAGTCAGGTTATTGAAGGGAAGTCGTTGGGCTCTGGTGGATTCCAGACATTCGGTTATTCCCTCAGTGGAGGCATGGATATGGACGGCAACAAATATCCTGACATCTTAGTCGGCTCTCTCGATGACCGTATAGCACTTCTGAGGGCACGTCCAGTTATCCATTTATCCAGAAACTTCACAGTAGAGCCAAAGATTGTGGATCCCAGCCAGTGCACGGACACTTGtataactGCAAAGATGTGTTTTACTTACACACTGAGCAACGGAAACCGCAACTTCAAGAAGGATATTAcTGTAAAATACACCGTAGAGGCGGACCGCAATCGGCGGAGCCCAAGAGTGCAGTTCCTCAATGGCAAAAGCACGTACACAGGCCTCCTGACCTTCTCCTCTCCAACCTGCCAGGAGCTCAAGCTTCAAGTAAATGAGCAGATAACAAATAAACTGGAGCCGGTTGTGTTTCTCCTGAACGTTTCTCTGAACGAGGCTGCAGTGGAGCCCCAACAGACTCTACAGGACCTTGATGCATTCCCTATGCTCAGTGGCCAACAGCAGCTGACTGAGAAAACCGAGATTAACTTCCAGAAGGAGTGTGGCTCTGATAATAAATGCAGCAGTAATCTGCAAGTGAAGGCGCAGTTTGCCAGTGAACAGCAAACCGTATTTCCCAGCGTGGATGATAGACAATCGATGGAATATAACAACAGCGTCAAGAAGCTGGTGCTGTTAGTGGAGGTGAGCAACGTGCCTGAGAGCGGCAGAGAGGCTGAGGACGCACATCAGGCCATGCTCAACATCACCGTTCCCCCTACACTCACCTACTCTGGCTTTCGTTCCAAGgaaattGAGTGTTATGCTAACAAGACTGTGATGTGTGATCTTGGAAACCCATTTAAGAGCAACAGAAAGATTTCCTTTCCGATCATATTTGAAACttttattacactttacacaGAGCAGATAGCAGTGCAGCTCCAGCTGTCTACTCTGAGTGAACAGAGTGATCTGTACCCTGTGCCAGTTGTCCTCAATGTGGAGAACACAATCCTCACCTCTTTCTCTATAGAGAACTCAGAGGTGAACACGTATTTTAGTGGTAAAGTTGTGGGTGAGTCTGCCATGAACAGCACAAGTGACATCGGCAGTCTAGTGGAATACGTCTTCCAGGTGAGTGTGGTGGGAGAACCCCTGGGAGTGTTGGGAACTCTGGTGGTGGATTTTAAATGGCCGATTGAGGTGACAAACGGGAAATGGCTGCTGTATCTGACGGAGATCCTAACCAACGGGACACCTGAGTCACACTGCGTTCCTCCTGGAAAAATTGTTAATCATCTGAACTTAACACTGTCAAAGAAGAGTTCGAATCGGCACAAGCGAGACTTGGACAACAGCCTGCCTCTCACTGAAGCAGCTGTAACCCTCCTCACTCCACGGAAAGAGACCTACCTGCTGGACTGTGCGGTGCAGACGGCTCGCTGCGTGACCTTCTCGTGCCCGCTGAGGAACATGTCCACTGCAGCCTCGCTCACCGTCAGAGCCCGTGTGTGGAACAGCACCATGCTGGAGGATTTTGCCAACGCTTTTCGGGTGATCGTGAAAGGGAACGCCACGCTGAGGCTGGAGACTGACAAACCCACCATCAAGATGAAAACTGAAAATCGAGAGTTTGTGGTGAACATTGATCCTGTTCCAGGAGAAGAAACCCCATATAACGTTCCGTTATGGATATATATCATTGCAGGCATAGCAGGAATCCTCTTATTAGGCATCATCAGCCTCATCCTGTGGAAGtgTGGGTTCTTTAAAAGAGCTGTCTACTACAAGGTGATGCCTAAGTACCACGGAGTGAAAATACGCAAGGAGGAGAGGTACAAGTTGAACAGGGCTTTCCAGCCTGAGCACGAGCTCAACAAAAAACTCTGGGTCACCAACTGGACAGAAGTGCAAGAATATTACTACTGAACTTGGAAAGCATCCGCTCAGCTGCTGCTGTAAAGGAATGCAGTGGCTGGAGGTTTCCTTTACTAACTGAAACAGACTCTGGGGCTTTGGCTTTTTGGGCCAACATTTACACATGATAAAGAATTGAGTACTGGGTGAAGTGTGGTGTTGTTCTTGtcgtcgttgttgttgttgtttgttgttgtttggtgCAATATTGTGTTGCAGATCAACAAGTTTTCATGACTGAAACCGTCCAGCATTCTCTCAGACCCAGTCTGGGACGtgtatctttattatttttttattgatttttccaATACTGAAAGTATTGCAGAACATTTTCTCACGGATATCTTTTGTGTATTATAGTTGATATTATAGAATGATGTTCAGTTTAtggctttttttaataattgtgtcTTTAAATGCACAATACTACAAGATGATGCTCACACTTCAACTGACACTGTGAGAGACATTTCTTTTTCAGAGCACTCTGACCTTAAACTATGAATGATGAGATTGCACAGATTGCAAGTGTTACAGTTTTGTAGCTCGTATGAAATACATTTCATCTCTTTGTCTGCCCGACAGATCTAGAAGACACAACGACACTGCCTGGTAACGAGGCACACAGTGAATTATAGCACAAGGAAGAGTACCACACATCACTGaactgatatttattttatatgtgcGTATATGACTAATGAGAGTCAATACACTGGAGAATATAATGTtgctttttactgttttatgtGCTTCTCTGTAAGCTTGTAATGCACAGTAAGATTATCATTCCACTACAATCTGGTTTAAAGTAGAGTAGGTCAAAAAAGATCTGAAACTTCACGCGTTACTTGTCATGACTTTCTTCTTGCGTCGTTCTGTGAAAGAATGTCTATCCATCGGTTTATGACGCTGTCATTAGGTCCTGCTGTAGCACTAGAAAAGGTTTGGGTAAATCATTAGGTCCGAATCAGGACTGATATATTATTAGTATATCCAGAAATGATGATTCAGTAATTCATATAAGAGTCAGAAAGTACATGTGGTTCTTCTTTTATACACTCcagatattaaaatgttttgtacataaA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0033334 fin morphogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06482 ITGA3, CD49c; integrin alpha 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227332 lncRNA downstream 688 6545032 ~ 6546253 (-) True G192012
TU227251 lncRNA downstream 58202 6463488 ~ 6488739 (-) True G191947
TU227257 lncRNA downstream 65772 6479767 ~ 6481169 (-) True G191950
TU227256 lncRNA downstream 68124 6478189 ~ 6478817 (-) True G191949
TU227253 lncRNA downstream 73358 6463488 ~ 6473583 (-) False G191947
TU227335 lncRNA upstream 27080 6621470 ~ 6622643 (-) True G192014
TU227400 lncRNA upstream 195476 6789866 ~ 6790153 (-) True G192070
TU227391 lncRNA upstream 201721 6796111 ~ 6796506 (-) True G192061
TU227392 lncRNA upstream 205252 6799642 ~ 6800076 (-) True G192062
TU227407 lncRNA upstream 213815 6808205 ~ 6809758 (-) True G192075
XM_026915558.2 mRNA downstream 33856 6507850 ~ 6513085 (-) True abi3b
XM_026915245.2 mRNA downstream 42212 6465015 ~ 6504729 (-) True LOC113527434
XM_026914996.2 mRNA downstream 86582 6437679 ~ 6460359 (-) False tbc1d12b
XM_026914995.2 mRNA downstream 86582 6437679 ~ 6460359 (-) True tbc1d12b
XM_026914548.2 mRNA downstream 110935 6417476 ~ 6436006 (-) True noc3l
XM_026914793.2 mRNA upstream 42965 6637355 ~ 6646574 (-) True dlx4b
XM_026915153.2 mRNA upstream 133191 6727581 ~ 6740582 (-) True kat7b
XM_026915156.2 mRNA upstream 152662 6747052 ~ 6752732 (-) True g6pca.1
XM_026915154.2 mRNA upstream 162395 6756785 ~ 6766100 (-) True aarsd1
XM_034309520.1 mRNA upstream 242047 6836437 ~ 6847966 (-) False a1cf
TU226699 other downstream 770921 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 932987 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1073471 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1244736 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 1483546 5059527 ~ 5063395 (-) False LOC113527048
trnap-agg_9 other upstream 1863937 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1880869 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2253272 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2482399 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 2482728 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile