RNA id: XR_004579193.1


Basic Information

Item Value
RNA id XR_004579193.1
length 2682
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id LOC113527335
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20234815 ~ 20251474 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCATGAGGCTTCTACAGTTTCGTTAACTTCATCATCCTGCACCTTCCGCaactgcaaagaaaagaaaatattcattttaggTCATGAAATACAAGTTTGGAGTTATAATGCACATCTCTGCAGTAGGTGGCAGTATACACCTAACGTGGGGGTCAGTGAAGAAGAGTTGCAAGGAACTTCACTACCATGTTAGTTTTTCCCCCAAATCCCAGATATCTCGCAAAAGGCATCTGTCAGAATACAGACAATGGGTTCCTACAAGATATTTGTCAGAGGAAGAGAAAGCACAAGAATAGATGACAGCTAAGACTGAGGTAACGTATCATCAAGACTAGAGTTCTTCATCCCACAGATGTCTCCAGTGTTGAAGATGGTCATCACACCTGATAATCAGTTCCTGCTGACTGCCTCGGAGGACAGCTCCCTGCTCATCTGGAGGATCACTGACCAGGAGGGATGCATGTTGAGCATGGACCAGAGTACACTAGAGGCAGAGGACCAGGAGGACAAGCTAAATTACAATCACATGGACTGCAAGACAAAGATTAATAAAATCAGGCAGAATTTCCTCCAGGAGATTGAGGCTTTGAAAAGCCAAATCCAAGTTAGACCATGAGATCTCAGTTCTGATAATTTAGCCCCATTAATGAGACAAGGACAGCAGATACTGatcaatttatgatttatgGATTGATGTAACACATTAAGTGCGTCAAAGCCAGTGTGAAAATATTCAGATAAACTCTGTCATGTACTATGTCTAGTTTTGGTGCAAGGTTCAAATTGAGAAACTTAGTGAGATGTAGTGTACAATTTTGACTTAACACCATGTGTTGGtgtacataatacataatgaaTAGTGTAAGAGTATAGCATGTATCATGATTTTAGACAACCATATAATTCAATTTCATATGAGGATTTCTTAAATCAATTTGTTTCTGATTTTAATGTATTCTTGAGTATCAGGTATCAAATGAgtacaaaatattattacatattgattaataattcaataaaaattatatatatctCACTGTAGGTTCTGAAAACTGAGAATGAGGAACAGAAGGTCTTTCACCACCAGATGCTGACCTTGATAACGGAGAAATATGACAAAGAGATGAAGGATGAAcagtctctctttatttttcaccatgCAGTATGGCTTGATTATACTTTAACACAGAATTTGGGCTTCAAGATTCAGTGAATCATTGATCTTGAGCTcaactgaaatttatttatttatttatttatttatttattccctcAGCCTAAAATATGTTTGTCTCAGTCTATCTAATAAGCCGCACTCATGTTTTTTGTTGAAATTTCTAGGCTGCTCCTAGCACTAAAATGTTTAATGCACTAAAATAGTAcgcatttttaaaagcatggcTAATTTTGTTCCCAGATCAAACCCAACGAAGACACTGTGTTAATAGCATTCAAGAAACACAAAGAGATGGAGCAGAGAATGGAGGCGATGCAGAAGAACTATGAGGAGAGACTGCACCAGCAAGAGGACGGCCATCTCTGCACGATGGAGGACATGAAACAGTCCTATGAGGCTAAGCTGCAGGAGCTAAGGAAGCCACACTGCTGTTCTGCTTTCTCTTAGGATCCTGTTTTCCTCATCTCCAGACCATGCCCCTGATCATTATTGTTATCTGTATCTAGTTAGCTTAAGTTGTGTCTTGTTTTGtcatttgttgtttgtttcttgtttgcTTCTTTTGTTTCTGAAGTCCTACAACTGTCAGTGCTGAATCGTTCACCTGGTTTTTGAGTTCCAGTCCGCCTAATTCCTTTTCCTAGTATTCTTCCTAGTTAAATGCATTATATGGGTCAATAAGCATTCATTTTTAGTTAAGTCTTGGGATTAGTATGTTTGGAGTGTGCATCTCCTTCTCCATCTTCTCTCTACAGCAACTGGCCGAGTTGCTGAAGTTGGAGGAGAGCCAGAAGGAGATGAAGCAGAAAGTTGACTCTGAGTTCAAGGAAATCAGCCACAAATATGAACAGCAGCTCCAGGAGGAGAAAAAGCCCAGCATGAAGAATGAATTGGAAAGGAAACTCTTGGAGAAGCAGGAGAGGAGAGGCTTCCGTCTGGCCACTTTGCCGTAAAGCCCAGATTGTGGAGTTTTGCAGTGATggttgaccttctgcaagtttctccatctccacacattatctctggagctcaaccagagtgaccatctggttcttggtcacctctcttaccaaggCCCTTCTCCCCCGATTGCTCAGTTTGGCCAGGCGACCAGCTCTAGGACAAGTACCTggttgttccaaacttcttccatttaagaattatgcAGGCCACTCTGCTCTTGTGAACCTTCAGTGCAGCAGAAAttttttgtagccttccccagatcGGTGCCTCgacacaatcctgtctctgagctctgcaggcagttcctttgacctTTGGATTGGTTTTTGCTCTGTTTGTTCAGCTGTtagacagcagTATCCTCAGGGAAGTCACAGTGGAAATCTCCAGGAGAGTTCAAAAGCGTGAGCCATCTGCAATGTGCAGGAATCCAGAGGCTAAAGAGGGATATCCTGGAGAAGGGACAAGGCCAAGCCACCCATTAACATAGCCAAGAACACCAGATTCTTGAATAAAGAAACACCTTGAATAAAagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235846 lncRNA upstream 281509 19950787 ~ 19953308 (+) True G199217
TU235845 lncRNA upstream 290351 19944244 ~ 19944466 (+) True G199216
TU235814 lncRNA upstream 348829 19876741 ~ 19885988 (+) True G199187
TU235786 lncRNA upstream 378337 19792634 ~ 19856480 (+) True G199161
TU235663 lncRNA upstream 808222 19426380 ~ 19426595 (+) True G199051
TU236496 lncRNA downstream 343767 20595241 ~ 20595444 (+) True G199796
TU237058 lncRNA downstream 1132602 21384076 ~ 21386033 (+) True G200325
TU237068 lncRNA downstream 1205945 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237153 lncRNA downstream 1358780 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 1388220 21639694 ~ 21643654 (+) True G200420
XM_026915022.2 mRNA upstream 5820 20202594 ~ 20228997 (+) True LOC113527333
XM_026915810.2 mRNA upstream 34545 20186824 ~ 20200272 (+) True LOC113527727
XM_034309636.1 mRNA upstream 34687 20186805 ~ 20200130 (+) False LOC113527727
XM_034309635.1 mRNA upstream 34687 20186826 ~ 20200130 (+) False LOC113527727
XM_026915770.2 mRNA upstream 217313 20012707 ~ 20017504 (+) True gpx9
XM_026915803.2 mRNA downstream 7400 20258874 ~ 20288139 (+) True zgc:165653
XM_026915804.2 mRNA downstream 7400 20258874 ~ 20285575 (+) False zgc:165653
XM_026915459.2 mRNA downstream 39119 20290593 ~ 20316556 (+) True mtr
XM_026915117.2 mRNA downstream 67815 20319289 ~ 20500533 (+) True ryr2a
XM_026915119.2 mRNA downstream 67815 20319289 ~ 20500533 (+) False ryr2a
XR_004579324.1 other upstream 668133 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1422555 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1423305 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1724658 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2076188 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 1751350 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 1757037 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2546707 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2954192 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3072599 23324073 ~ 23329571 (+) True G201214

Expression Profile