Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402870.2 |
| length | 1095 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC113527366 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 19309483 ~ 19314815 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008144 | drug binding | molecular_function |
| GO:0019825 | oxygen binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU235481 | lncRNA | upstream | 484922 | 18823633 ~ 18824561 (+) | True | G198901 |
| TU235464 | lncRNA | upstream | 540793 | 18768393 ~ 18768690 (+) | True | G198886 |
| TU235453 | lncRNA | upstream | 605784 | 18703475 ~ 18703699 (+) | True | G198876 |
| TU235395 | lncRNA | upstream | 610980 | 18680173 ~ 18698503 (+) | True | G198818 |
| TU235326 | lncRNA | upstream | 778187 | 18525668 ~ 18531296 (+) | True | G198767 |
| TU235663 | lncRNA | downstream | 111565 | 19426380 ~ 19426595 (+) | True | G199051 |
| TU235786 | lncRNA | downstream | 477819 | 19792634 ~ 19856480 (+) | True | G199161 |
| TU235814 | lncRNA | downstream | 561926 | 19876741 ~ 19885988 (+) | True | G199187 |
| TU235845 | lncRNA | downstream | 629429 | 19944244 ~ 19944466 (+) | True | G199216 |
| TU235846 | lncRNA | downstream | 635972 | 19950787 ~ 19953308 (+) | True | G199217 |
| XM_026915562.2 | mRNA | upstream | 388717 | 18827636 ~ 18920766 (+) | True | ebf3a |
| XM_034309466.1 | mRNA | upstream | 388717 | 18827637 ~ 18920766 (+) | False | ebf3a |
| XM_026915574.2 | mRNA | upstream | 388717 | 18827639 ~ 18920766 (+) | False | ebf3a |
| XM_026915575.2 | mRNA | upstream | 388717 | 18827639 ~ 18920766 (+) | False | ebf3a |
| XM_026915570.2 | mRNA | upstream | 388717 | 18828421 ~ 18920766 (+) | False | ebf3a |
| XM_026914625.2 | mRNA | downstream | 55511 | 19370326 ~ 19373349 (+) | True | LOC113527107 |
| XM_026915793.2 | mRNA | downstream | 211827 | 19526642 ~ 19564198 (+) | True | LOC113527713 |
| XM_026915899.2 | mRNA | downstream | 379583 | 19694398 ~ 19719754 (+) | True | c12h10orf90 |
| XM_026915900.2 | mRNA | downstream | 379583 | 19694398 ~ 19719754 (+) | False | c12h10orf90 |
| XM_026915906.2 | mRNA | downstream | 412856 | 19727671 ~ 19825878 (+) | True | LOC113527774 |
| XR_004579138.1 | other | upstream | 497221 | 18806085 ~ 18812262 (+) | True | si:ch211-221j21.3 |
| TU235479 | other | upstream | 497971 | 18806123 ~ 18811512 (+) | False | si:ch211-221j21.3 |
| TU235296 | other | upstream | 799324 | 18441886 ~ 18510159 (+) | True | G198737 |
| TU234778 | other | upstream | 1150854 | 18155151 ~ 18158629 (+) | False | pde6gb |
| trnai-uau_6 | other | upstream | 1732107 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
| XR_004579324.1 | other | downstream | 211827 | 19526642 ~ 19566684 (+) | False | LOC113527713 |
| TU237322 | other | downstream | 2688009 | 22002824 ~ 22003274 (+) | True | G200571 |
| XR_003402874.2 | other | downstream | 2693696 | 22008511 ~ 22012304 (+) | False | srsf2a |
| TU237829 | other | downstream | 3483366 | 22798181 ~ 22871284 (+) | True | mrpl27 |
| TU237980 | other | downstream | 3890851 | 23205666 ~ 23206379 (+) | True | G201154 |
