RNA id: XR_003403575.2


Basic Information

Item Value
RNA id XR_003403575.2
length 1799
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113535197
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 135208 ~ 139734 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAAAGTACACTTTCTATAAAATCTTAATCTACAAAGATGTCAAGGATTTCTGAGTGTTTGAGTACAGTATGATGCTCTTTTACACCAGTATAAACACCCCAGTGATTCACTGCCTCCTGGTTTTAGCTGCACGGGTTTGTAAAGCCAGCTGATAGATACAGCAGTGAGGACTGTCCTTCCCTTCTCTGGGCTTCTGGGCTCTTCACCTCCAGCCTGTGGCACTTCTCCGCTCCGCAGTCCACCCCACTGCTCGCTGACCCCAACACTGCGGTGCCATGTGCATCCCAATGACTTCACCAGTGGGCAGCTTTAGTACATTTAAACCACAGTTTACAATTAAAGCTCCAAAACCAGCCACAGGCCGTCATGTGGAGATTGAGAAGGAGATCTGGACAAAACGTGAAAAGGATTTCTAATTTGGGCTCAAGAAGAGAGAGCGAGTGAAAAAGAGGAGAAGTCAGAGAACACAAACAGTCTACTGACGAAGAACACGCCTTTGACGTCGTCCACTCCGACCAGCATGTCTGGTGTTAATCGATACACACTGAGCTGCAGGAGATCGAAGCCGCTGGCGCTCAGACTTGCACAGACCTGAGCCTCATCCAGTGGTACGACAGGGATCCGAACATCAGGAGCTGCCATGTAAAAGCTCTCCCCCAGAGCTCCAATGAGCAGGAGGTGACCACCATTACGCAGGAGGCTGGACAGGTTGCGTAGTGCGTGAGTGAACGAGGAAACGTCAGGACTCACACTTTCAAGGCAGAACGAGGACACGAGGCAGTCAGCACCGGAAGCAGGCAAAGATCCGGGTGGGAATGGGAACGGGTGGTGAACGTTAACAGGAAAAATATCTGTCACCACTGAACGAAGCCTCTCTGCTTTCTCTTGCCATGCGGAGGAACTGTGTTAAAGCATTAGGTTCATTCatgttactgtacattttaaaagatataCAGTCTACAGAAAAAACTGATAGGTTAAAAGACTTGCCATCATAAAGTACTTGCAAAGTAAAGTGACCCTACTACcaagaaatatttatttcagcCATTAGGGACAAAAAATTGCTTGAACATTTCACAAACagctaaaaatgaaataatatggAGTTTGGAGGCTTATGTTTTTGGAAGTATTTGAACATGAATTCCATATATTTGAATTCTACACATTACGTTATATTAAGTTTTTATTGAGTGAACAAACTCAAGCTTTTAATGATCACAGTTGTCTCTCACTCTCGTGTTCATGAAGTCAAGTCAAGAGACAGAGTAGAGTGGAGTCAAAACAGAAGATATGAACCGTAATGATTAACTCATTAGCATCTACAGTTTTTATGTTCTACAGAAAGTCAGCAATGTTAGCATAGCCTAACTAGCTAGAACATTACCAGAATAGTTACACTGGGAATcaagtgtttaacattactgtaGAAAATAAGCTATTTTTTAGTAGAACATGAAAGAAATGATTTGCTTGAATAGTGAAAGTGTGTACTTTTCCTGGGAATCCCAGACACCTAATTTAGATCTAGACCTAATTTAGACctaatttagatttttatttctcattttttttaaatctcaaagcTGTAACAGTAATTTAAAactatatgtttttaaaagcaaatctTACACTTAAACCCAAgttcaaaacacagaaaaagcactggcaaaatgtatataaattgaaattcatattcagatacTTCTGTCAGCTTCCGGACTCCATACAATATGATGTCAagtgtaaatactgtatttttgaATAAAGAGGATCAATAAGAGACAGCCTTAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223615 lncRNA upstream 367174 506908 ~ 508671 (-) True G188908
TU223616 lncRNA upstream 369297 509031 ~ 509294 (-) False G188909
TU223617 lncRNA upstream 369297 509031 ~ 511009 (-) True G188909
TU223629 lncRNA upstream 393773 533507 ~ 534276 (-) True G188918
TU223636 lncRNA upstream 405890 545624 ~ 773583 (-) True G188923
XM_034309228.1 mRNA upstream 199332 339066 ~ 620756 (-) False grid1b
XM_034309227.1 mRNA upstream 199332 339066 ~ 620755 (-) True grid1b
XM_034309229.1 mRNA upstream 199332 339066 ~ 536337 (-) False grid1b
XM_034309344.1 mRNA upstream 493269 633003 ~ 636382 (-) True LOC117598555
XM_034309263.1 mRNA upstream 496763 636497 ~ 638042 (-) True LOC117598518
TU223922 other upstream 1425156 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 1428552 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 2055253 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 2653312 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 2660342 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile