RNA id: XR_004579155.1


Basic Information

Item Value
RNA id XR_004579155.1
length 1091
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC113535322
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 243923 ~ 254748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcgtcgtctcttcactccactgatctctgttcacgctaACATCGAGAGAGAACCTGGAGGAGCTTGATTAACCTTCTCCAGCACGTGGACACGTGAGATGCTCAGGACTACATGGATGGCTGGAAATCCAACAGTGCTTTTAATTAGCTTTCTGAGGAGTTCCTGAGGCTAATGCTAGCTCGGGCTCTTACACATCGCTGGCGTCTTAACCATGTGGAAGGATTTAACAGATAAATTGTGTGTTTGCTGCTGCCTCTCTGCAGGCGTGAGCTCCAGTGAACATGcaGCATGCCAGCGCGTAATGGCGCAATTATGGCGAACACAGCGAGACTCCATCCCCAAGCTTGAAGGCTCTATTCAGAAGTGGTCATTAGTAAGGAGAGGATCCTTGGCCTCAGGGTCTGGACACAGAGGAACccgctaacacacactctcctccgCACAGCACACAAGCCCAATTCTTCTAAGTGTTGTGTGCTGTTGCTAAGCAACCCCAACGACTAACATCAGATGCCTGGTACGTGAGAGAAAGAACCAAGTGGATGTTTATGAGTTTTAGGAGTGCAGGGATTAGGAGGAAGATCCCAGGTTTGGAGTAGAAGCTATTTATCGACAGTgttacaaggtttttttttagaatctCAGAGGAGCCTCACATAACATCACACACCTTAATCTGTAGAATgttcttgattaattttctatagcagcaactctgacagtagtgcagcagcaaatcacaggtttactttaatgtgctcgttctaatactttgttttttctgtaaggtgatgtttatttaacatttatggaatgagtctccagtgtcagtgctttgtaacagtcatgccTAAGTCTAAAAACGTGAAGTCTTTTTGACATCTtcaggagtttacactttgaaGTGTCtccataacatgacaagcttaggagagaggaaaaagcagAAGATGAGCGAGCGACTGTGTGTAATCATTATATAAACATTGTGCTATAGTGTAactaagaacaggaactaaaatcATGAGCAGCAAACAGATATTTCAGCCCCTTATTTTGAATGTCTGTGAATTAGatgcaataaaatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223110 lncRNA upstream 61048 157512 ~ 182875 (+) True G188466
XR_004579296.1 lncRNA upstream 235408 8047 ~ 8515 (+) True LOC113537089
TU223262 lncRNA downstream 254282 509030 ~ 511976 (+) False G188605
TU223264 lncRNA downstream 254282 509030 ~ 511049 (+) False G188605
TU223261 lncRNA downstream 254672 509420 ~ 510163 (+) True G188605
TU223343 lncRNA downstream 379652 634400 ~ 634983 (+) True G188681
TU223359 lncRNA downstream 438211 692959 ~ 694469 (+) True G188694
XM_026928106.2 mRNA upstream 21504 137521 ~ 222419 (+) True ccser2b
XM_026928107.2 mRNA upstream 23366 137521 ~ 220557 (+) False ccser2b
XM_026928108.2 mRNA upstream 23388 137521 ~ 220535 (+) False ccser2b
XM_026928597.2 mRNA upstream 92469 139859 ~ 151454 (+) True si:ch211-207i20.2
XM_026928598.2 mRNA upstream 92472 139860 ~ 151451 (+) False si:ch211-207i20.2
XM_034309343.1 mRNA downstream 19633 274381 ~ 275446 (+) True LOC117598554
XM_026928112.2 mRNA downstream 466303 721051 ~ 753040 (+) True btbd16
XM_034309248.1 mRNA downstream 466303 721051 ~ 753040 (+) False btbd16
XM_026928113.2 mRNA downstream 466303 721051 ~ 753040 (+) False btbd16
XM_034309259.1 mRNA downstream 507456 762204 ~ 784991 (+) True plekha1b
XR_003403557.2 other upstream 23555 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 1408344 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 2505945 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 2715377 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 2715377 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2983696 3238444 ~ 3239216 (+) True G190028

Expression Profile