RNA id: XR_004579129.1


Basic Information

Item Value
RNA id XR_004579129.1
length 281
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC113527241
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25134451 ~ 25135165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGTTTCTTCGACAAGAAAAGAAACACCTTTCTTTCTGATATCTTCACCTTTAACTGGCTTCATCACATGGACACAGTAAAACTTACTGTGACTTCGTTTGGAGAGCAGTTTTCCTACCTGTTGAAAAACGTGAGTGAGGATGCAAGGAAGGCAGGAGTGACTGAGACACCATGTAACTATGGAGACAAGGGCATGCTGAAGTTAATGTTGAGTGAATTATTTGGAGAATCCCCCGTCTCTGTCAGAGAGGCCTACACGTCCCAGCCCCTGAAAGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239347 lncRNA upstream 22967 25110288 ~ 25111484 (+) True G202286
TU239334 lncRNA upstream 45738 25086915 ~ 25088713 (+) True G202273
TU239266 lncRNA upstream 72282 24973904 ~ 25062169 (+) True G202218
TU239263 lncRNA upstream 161211 24971620 ~ 24973240 (+) True G202215
TU239219 lncRNA upstream 197574 24936284 ~ 24936877 (+) True G202182
TU239355 lncRNA downstream 51617 25186782 ~ 25189327 (+) False G202290
TU239356 lncRNA downstream 51617 25186782 ~ 25189327 (+) True G202290
TU239382 lncRNA downstream 64545 25199710 ~ 25199947 (+) True G202310
TU239457 lncRNA downstream 155576 25290741 ~ 25290965 (+) True G202342
TU239421 lncRNA downstream 209041 25344206 ~ 25428112 (+) False dupd1
XM_026915692.2 mRNA upstream 54622 25063600 ~ 25079829 (+) True LOC113527669
XM_034309493.1 mRNA upstream 54622 25068556 ~ 25079829 (+) False LOC113527669
XM_026915511.2 mRNA upstream 121160 25007848 ~ 25013291 (+) True lrit2
XM_026914853.2 mRNA upstream 131181 24998950 ~ 25003270 (+) True lrit1b
XM_026915509.2 mRNA upstream 269770 24861416 ~ 24864681 (+) True LOC113527566
XM_034309604.1 mRNA downstream 11504 25146669 ~ 25153897 (+) True LOC117598682
XM_034309567.1 mRNA downstream 19827 25154992 ~ 25162871 (+) True LOC113527238
XM_034309510.1 mRNA downstream 125575 25260740 ~ 25270653 (+) True LOC113527655
XM_026915668.2 mRNA downstream 125575 25260740 ~ 25270653 (+) False LOC113527655
XM_034309367.1 mRNA downstream 247700 25382865 ~ 25386388 (+) True LOC117598570
TU239119 other upstream 468926 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 752164 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1735791 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1804880 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1928072 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 194044 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 362550 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 363015 25498180 ~ 25502628 (+) True G202374

Expression Profile