RNA id: XR_004579132.1


Basic Information

Item Value
RNA id XR_004579132.1
length 2199
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC117598464
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24872954 ~ 24894054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagtgtggactTCCCCACTGCAGGTAACccgcacagcacacacacacacacccctgcagAGCTTCGCGTGTTCATCAACACAACACCTTCATCAGGAATAAAGAGGAACAGAAATAAAGgccTCATTACTGAAAAACCGCGGACGCTGAGGAAGCAGAGCGAGTAAGAGCAGgtTGAGCTGCTCCTCATCTTGTTATCCTCGAGATTTAGCTGCTGGAAAATCCTTATCCtaggtcacagggagcctggagactatcccaggggactcggggcacaaggtgggggacatcCTGAACGGGGAACCAAGCCATCACAGGgcacgatcacacacacactcacacacaatttggaaacaccaatcagcctacaccgcatgtctttggactgggggagggaaaccctgaagcatggggagaacatgcaaactccacacacacagggtgggaatcaaacccccaaccctggaggtgtgaagCAAACATGCTAATCATAAGCCACTGTGTCACGCTGCTGGAAAAtcatctttttaattcatttattcttaaTAAATCTTTACCCAGTGATACAGagggtagcgttgctgcctcaacATGCTCCACGTTCCCAgtttcgatcctgagctcgggttaccgTCGGTGTGGAGTTTCGTACGTTCTCCCCGTGTCCGGGTGagcttcctccaggttctccggtttcctcccactttccagaaacatgccagtaggtggattgtgAAGACAAATTACCCCTATGcatgaataatgtgtgtgaaCTGCAGTgcaattttgcaatatttatgcTGAATTCATCCATACTGGAAACTCCTAAAAGCCAGACCTCCAACATGGACAACTGCAATGGTACGTTCATTCAAACTGCAATTCCAAGTCAGGAACTCGGCGAACATCCACCTATCCTGAGTTCTCGGACAAAAACACACCTGACGTCACAACAACATGGCGGCAAAGTGTCAGCGGTGCACAGAATTCCCGTTGCTTTAATTTTTACTTGATAAAACTTTACTTTACTCGATCTGTAGCTTTTGCTTTGTGAAACATGTTTAACAACTTTGTAAGTTTAGATCTGTAAAGTAGCTCCGCTGATCTCAGCTCAGTTGTGACAGACTGCTCGGATTTTATGACAGAGATGAACAAGGCAGTTGATCTATCGCGTACGTCGTTTCTCAGCGCTAATCGCACAGGAGTAATTCATGCACATCTTCTTAATGTGCTTATCAAATTCAGAGACTTGACATACAAACATCACCGTGCTctgagcagccatgtttttcCAAGCTGAAGCCTGGGGCGCTTTTAGACATGAACTGGAGAAACAATGGATCTCAGCATTAAACCCAAGGCAGCATGGGCTGAACcggatggagtgtgtgttcgttttgttaattatttttaattaaataagaacCCTAGCACACAAACACTGGGAGTCAGTGGCAAATAAAACCTCAGGTGTAGGAATGTGAGCAGTgccagcatggtgtgtgaattctggctctgacagttcctcaacctcagctacatcccTCCAGTTCATAATCACTCTTAACTAGAGATGTGTCCTGAACTGCTTTAATTTAATCCCACTCGCACATTAAACAAATTGAACTGCTTCTCAATATGATCAAAGCAGTAGTCTAATTCAAACCACCACTGGAAACATCTGGTTATTAAATTTCCTTTGctataaaacataaacagtTTTTTCAGCAACTCAGGAATCTTTTATGAAACCCAGGAACCTTACTGTTctagctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttggacgTGTGTTTGGgacactgctgctgttttctaGTCCAGCTGTCACGGCTCACTTGCTGATGAAGTTAATGAtgagcgctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcacgcttTCTACCCATCTGGCCCTGAAATGCACAGTAACAGCTGGATCTGAACACCAAAACAAACTAACTGTGTCTACTGGGACTGTGGAGTTAATCAACTACCGTCTcactatccatctctctctctctctctctctctctctctttctgtctgtcctctgtctttttttttctccgtctctgtctttttc

Function

GO:

id name namespace
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007059 chromosome segregation biological_process
GO:0030261 chromosome condensation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000280 nuclear division biological_process

KEGG:

id description
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239203 lncRNA upstream 19069 24852287 ~ 24853885 (+) True G202173
XR_004579278.1 lncRNA upstream 54602 24816481 ~ 24818352 (+) True LOC117598647
TU239191 lncRNA upstream 54648 24816541 ~ 24818306 (+) False LOC117598647
TU239184 lncRNA upstream 81549 24789342 ~ 24791405 (+) True LOC113527734
XR_003402885.2 lncRNA upstream 82141 24789320 ~ 24790813 (+) False LOC113527734
TU239219 lncRNA downstream 42230 24936284 ~ 24936877 (+) True G202182
TU239263 lncRNA downstream 77566 24971620 ~ 24973240 (+) True G202215
TU239266 lncRNA downstream 79850 24973904 ~ 25062169 (+) True G202218
TU239334 lncRNA downstream 192861 25086915 ~ 25088713 (+) True G202273
TU239347 lncRNA downstream 216234 25110288 ~ 25111484 (+) True G202286
XM_026915509.2 mRNA upstream 8273 24861416 ~ 24864681 (+) True LOC113527566
XM_034309056.1 mRNA upstream 187800 24677184 ~ 24685154 (+) True bub3
XM_026915787.2 mRNA upstream 190179 24677184 ~ 24682775 (+) False bub3
XM_026915788.2 mRNA upstream 198378 24669218 ~ 24674576 (+) True LOC113527709
XM_026915789.2 mRNA upstream 206346 24661044 ~ 24666608 (+) True LOC113527710
XM_026914853.2 mRNA downstream 104896 24998950 ~ 25003270 (+) True lrit1b
XM_026915511.2 mRNA downstream 113794 25007848 ~ 25013291 (+) True lrit2
XM_026915692.2 mRNA downstream 169546 25063600 ~ 25079829 (+) True LOC113527669
XM_034309493.1 mRNA downstream 174502 25068556 ~ 25079829 (+) False LOC113527669
XM_034309604.1 mRNA downstream 252615 25146669 ~ 25153897 (+) True LOC117598682
TU239119 other upstream 207429 24661225 ~ 24665525 (+) False LOC113527710
TU238950 other upstream 490667 24381787 ~ 24382287 (+) True G201962
TU238026 other upstream 1474294 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 1543383 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 1666575 23205666 ~ 23206379 (+) True G201154
TU239415 other downstream 435155 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 603661 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 604126 25498180 ~ 25502628 (+) True G202374

Expression Profile