RNA id: XR_004579295.1



Basic Information


Item Value
RNA id XR_004579295.1
length 998
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC117598668
representative True

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17030750 ~ 17043247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GTTCTAGACAATCAGGCCGCCTCGCTGTGGGAGACACCGTGACTGCCAGGTATCAGCAATCATGGACATTAAGGTCCTGCTTGTACTGCTGTGCGATTCCTGGTGAGTCCTGGAGATGCATGGTAATTCACAGGGCTGTTTCAGGGGACTACATGGAGCTTTGGCTGATTGAGGCCAgccacaaaagaaaaatctctgcTAAAGTGCAGCTGCCTCCTTCTCAAGGTCTACTGAAAGACAAAGGAAATCAGCTTCATTTGCTGTATGCCATTCACAACTCCAGAGCGAGGCTATAATGAAAGCAGGATTCTTCGAGGAGACATTAGACCAAGAAAAAGCCATCTATATAAAGCGCCGCTCCTCCATACAAATGGCTTTGAAGCAGCTGCTTTCATCCTGCAGCAGCAGAACGGGTGTAGCAGTGGAAGACGTTGGACTTTGGATCGGAGggctgtgagttcaaatcccagtactgccaagctgccgctgcttaaccctcaactgctcagttgtataaatgagataaatgcaAATTCTGTCAAATGCCATTAATGTAAACTTAATGTGTGTGGACACACAAGTTAAGATCGATCATTAGCAGGTCACAtgaaatattatgtatataGGCTCAATAACTTACCTAAAACTCCCACATTGTCTATATTTTTTGTTCTGCATTCTAAACTTGGTCAATGCTTACAATATGTTTTGATTTTGGTGGGAGAAATGAGTGTAAGTGCAAAGTGCAAAACCTGTTTTCCCACAGGACGTAATGGAATCTTTACCGACATGTCAATTTGGACAGGATATATATTGGATTGGGTCATTTCTTCTGATCACTTTATACATGGCATAATATGGTGGAATCGTTCCAGATGTGTGAATGCACAGTCTGTAAAAAATTACTGATATTACGGACATCAGATTCGGATAATATAAGCCCACCAGTTCACCTTTTCACTATTTAGGTAAGCAAAGGACACATTTAGAAGggatta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU234194 lncRNA upstream 76739 16943946 ~ 16954011 (+) True G197803
TU234207 lncRNA upstream 123608 16906830 ~ 16907142 (+) True G197816
TU234113 lncRNA upstream 266423 16764008 ~ 16764327 (+) True G197726
TU234110 lncRNA upstream 266948 16758108 ~ 16763802 (+) True LOC117598690
XR_004579312.1 lncRNA upstream 267205 16758145 ~ 16763545 (+) False LOC117598690
TU234450 lncRNA downstream 284527 17327774 ~ 17327950 (+) True G198007
TU234451 lncRNA downstream 302769 17346016 ~ 17348598 (+) True G198008
TU234498 lncRNA downstream 358158 17401405 ~ 17403628 (+) True G198041
TU234506 lncRNA downstream 362456 17405703 ~ 17411141 (+) True G198045
TU234503 lncRNA downstream 368207 17411454 ~ 17415869 (+) False G198044
XM_026914655.2 mRNA upstream 1828 17022725 ~ 17028922 (+) True asb3
XM_026914791.2 mRNA upstream 107522 16901393 ~ 16923228 (+) False slc9a3r1a
XM_026914790.2 mRNA upstream 107522 16901395 ~ 16923228 (+) True slc9a3r1a
XM_034309427.1 mRNA upstream 131020 16890364 ~ 16899730 (+) False narf
XM_034309209.1 mRNA downstream 81937 17125184 ~ 17274561 (+) False nrxn1a
XM_034309211.1 mRNA downstream 81937 17125184 ~ 17274561 (+) False nrxn1a
XM_026915955.2 mRNA downstream 81937 17125184 ~ 17274561 (+) False nrxn1a
XM_034309210.1 mRNA downstream 81937 17125184 ~ 17274561 (+) False nrxn1a
XM_026915948.2 mRNA downstream 81937 17125184 ~ 17274561 (+) False nrxn1a
TU234137 other upstream 167255 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 3472237 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 3472321 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 4557011 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 5744482 11286197 ~ 11286268 (+) True trnaq-cug_16
trnai-uau_6 other downstream 534036 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 1111904 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 1398639 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1762838 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1762876 18806123 ~ 18811512 (+) False si:ch211-221j21.3

Expression Profile