Item | Value |
---|---|
RNA id | XR_004579295.1 |
length | 998 |
lncRNA type | inter_gene |
GC content | 0.42 |
exon number | 4 |
gene id | LOC117598668 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047606.1 |
NCBI id | CM018552.1 |
chromosome length | 26563515 |
location | 17030750 ~ 17043247 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU234194 | lncRNA | upstream | 76739 | 16943946 ~ 16954011 (+) | True | G197803 |
TU234207 | lncRNA | upstream | 123608 | 16906830 ~ 16907142 (+) | True | G197816 |
TU234113 | lncRNA | upstream | 266423 | 16764008 ~ 16764327 (+) | True | G197726 |
TU234110 | lncRNA | upstream | 266948 | 16758108 ~ 16763802 (+) | True | LOC117598690 |
XR_004579312.1 | lncRNA | upstream | 267205 | 16758145 ~ 16763545 (+) | False | LOC117598690 |
TU234450 | lncRNA | downstream | 284527 | 17327774 ~ 17327950 (+) | True | G198007 |
TU234451 | lncRNA | downstream | 302769 | 17346016 ~ 17348598 (+) | True | G198008 |
TU234498 | lncRNA | downstream | 358158 | 17401405 ~ 17403628 (+) | True | G198041 |
TU234506 | lncRNA | downstream | 362456 | 17405703 ~ 17411141 (+) | True | G198045 |
TU234503 | lncRNA | downstream | 368207 | 17411454 ~ 17415869 (+) | False | G198044 |
XM_026914655.2 | mRNA | upstream | 1828 | 17022725 ~ 17028922 (+) | True | asb3 |
XM_026914791.2 | mRNA | upstream | 107522 | 16901393 ~ 16923228 (+) | False | slc9a3r1a |
XM_026914790.2 | mRNA | upstream | 107522 | 16901395 ~ 16923228 (+) | True | slc9a3r1a |
XM_034309427.1 | mRNA | upstream | 131020 | 16890364 ~ 16899730 (+) | False | narf |
XM_034309209.1 | mRNA | downstream | 81937 | 17125184 ~ 17274561 (+) | False | nrxn1a |
XM_034309211.1 | mRNA | downstream | 81937 | 17125184 ~ 17274561 (+) | False | nrxn1a |
XM_026915955.2 | mRNA | downstream | 81937 | 17125184 ~ 17274561 (+) | False | nrxn1a |
XM_034309210.1 | mRNA | downstream | 81937 | 17125184 ~ 17274561 (+) | False | nrxn1a |
XM_026915948.2 | mRNA | downstream | 81937 | 17125184 ~ 17274561 (+) | False | nrxn1a |
TU234137 | other | upstream | 167255 | 16855770 ~ 16863495 (+) | False | anapc16 |
XR_004579176.1 | other | upstream | 3472237 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
XR_004579175.1 | other | upstream | 3472321 | 13483301 ~ 13558429 (+) | False | tcf7l2 |
TU231182 | other | upstream | 4557011 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
trnaq-cug_16 | other | upstream | 5744482 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
trnai-uau_6 | other | downstream | 534036 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
TU234778 | other | downstream | 1111904 | 18155151 ~ 18158629 (+) | False | pde6gb |
TU235296 | other | downstream | 1398639 | 18441886 ~ 18510159 (+) | True | G198737 |
XR_004579138.1 | other | downstream | 1762838 | 18806085 ~ 18812262 (+) | True | si:ch211-221j21.3 |
TU235479 | other | downstream | 1762876 | 18806123 ~ 18811512 (+) | False | si:ch211-221j21.3 |