Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579326.1 |
| length | 1285 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 2 |
| gene id | LOC117598703 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 8259214 ~ 8261423 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006904 | vesicle docking involved in exocytosis | biological_process |
| GO:0000145 | exocyst | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU228069 | lncRNA | upstream | 118154 | 8126773 ~ 8141060 (+) | True | G192644 |
| TU228075 | lncRNA | upstream | 187622 | 8069143 ~ 8071592 (+) | True | G192650 |
| TU228011 | lncRNA | upstream | 319630 | 7939041 ~ 7939584 (+) | True | G192591 |
| TU227775 | lncRNA | upstream | 784210 | 7474437 ~ 7475004 (+) | True | G192422 |
| TU227745 | lncRNA | upstream | 859586 | 7399343 ~ 7399628 (+) | True | G192394 |
| TU228175 | lncRNA | downstream | 7725 | 8269148 ~ 8270226 (+) | True | G192716 |
| TU228197 | lncRNA | downstream | 49455 | 8310878 ~ 8388117 (+) | True | G192737 |
| TU228231 | lncRNA | downstream | 252959 | 8514382 ~ 8515934 (+) | True | G192760 |
| XR_004579293.1 | lncRNA | downstream | 335231 | 8596654 ~ 8601770 (+) | True | LOC117598667 |
| TU228350 | lncRNA | downstream | 656617 | 8918040 ~ 8918245 (+) | True | G192858 |
| XM_026915094.2 | mRNA | upstream | 82015 | 8149279 ~ 8177199 (+) | True | reep3b |
| XM_034309364.1 | mRNA | upstream | 82015 | 8161549 ~ 8177199 (+) | False | reep3b |
| XM_026915712.2 | mRNA | upstream | 240000 | 8011864 ~ 8019214 (+) | True | nrbf2b |
| XM_026914661.2 | mRNA | upstream | 282046 | 7974219 ~ 7977168 (+) | True | adoa |
| XM_026915042.2 | mRNA | upstream | 320600 | 7852411 ~ 7938614 (+) | True | arid5b |
| XM_026915893.2 | mRNA | downstream | 50698 | 8312121 ~ 8324525 (+) | False | tubgcp2 |
| XM_034309618.1 | mRNA | downstream | 50837 | 8312260 ~ 8324525 (+) | True | tubgcp2 |
| XM_026915138.2 | mRNA | downstream | 64729 | 8326152 ~ 8358172 (+) | True | myof |
| XM_026915140.2 | mRNA | downstream | 64729 | 8326152 ~ 8358172 (+) | False | myof |
| XM_026915139.2 | mRNA | downstream | 64729 | 8326152 ~ 8358172 (+) | False | myof |
| TU227843 | other | upstream | 631103 | 7605981 ~ 7628111 (+) | True | G192484 |
| TU227741 | other | upstream | 822842 | 7428579 ~ 7436372 (+) | True | tfam |
| XR_003402840.2 | other | upstream | 1424957 | 6822740 ~ 6834257 (+) | False | asah2 |
| trnap-cgg_7 | other | upstream | 1469269 | 6789874 ~ 6789945 (+) | True | trnap-cgg_7 |
| trnap-ugg_20 | other | upstream | 1470448 | 6788695 ~ 6788766 (+) | True | trnap-ugg_20 |
| trnaa-ugc_7 | other | downstream | 846263 | 9107686 ~ 9107757 (+) | True | trnaa-ugc_7 |
| trnal-aag_6 | other | downstream | 846429 | 9107852 ~ 9107933 (+) | True | trnal-aag_6 |
| trnad-guc_4 | other | downstream | 1003351 | 9264774 ~ 9264845 (+) | True | trnad-guc_4 |
| trnad-guc_5 | other | downstream | 1004840 | 9266263 ~ 9266334 (+) | True | trnad-guc_5 |
| TU228915 | other | downstream | 1007219 | 9268642 ~ 9271331 (+) | False | LOC113527534 |
