RNA id: trnaf-aaa


Basic Information

Item Value
RNA id trnaf-aaa
length 82
RNA type tRNA
GC content 0.65
exon number 1
gene id trnaf-aaa
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9077566 ~ 9077647 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgcgtgggttcgaatcccaccgcTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228680 lncRNA downstream 148918 8927981 ~ 8928648 (-) True G193138
TU228456 lncRNA downstream 536285 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA downstream 564096 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA downstream 592388 8483608 ~ 8485178 (-) True G192954
TU228459 lncRNA downstream 622263 8452197 ~ 8455303 (-) True G192948
TU228880 lncRNA upstream 76795 9154442 ~ 9156287 (-) True G193315
TU228886 lncRNA upstream 80544 9158191 ~ 9158569 (-) True G193319
TU228882 lncRNA upstream 81787 9159434 ~ 9184089 (-) True G193316
TU228901 lncRNA upstream 124345 9201992 ~ 9202672 (-) True G193334
TU228925 lncRNA upstream 194770 9272417 ~ 9272654 (-) True G193355
XM_026915717.2 mRNA downstream 50260 9026025 ~ 9027306 (-) True rcvrnb
XM_034309637.1 mRNA downstream 121241 8940912 ~ 8956325 (-) True LOC113527765
XM_034309579.1 mRNA downstream 179505 8859204 ~ 8898061 (-) True mprip
XM_026914686.2 mRNA upstream 15494 9093141 ~ 9132326 (-) True LOC113527142
XM_026915297.2 mRNA upstream 84577 9162224 ~ 9251115 (-) False myocd
XM_026915295.2 mRNA upstream 84577 9162224 ~ 9251115 (-) False myocd
XM_026915296.2 mRNA upstream 84577 9162224 ~ 9251115 (-) False myocd
XM_026915294.2 mRNA upstream 84577 9162224 ~ 9251115 (-) False myocd
trnal-uag_4 other downstream 367 9077118 ~ 9077199 (-) True trnal-uag_4
trnaa-ugc_6 other downstream 706 9076789 ~ 9076860 (-) True trnaa-ugc_6
XR_004579166.1 other downstream 219818 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnal-uag_3 other downstream 602226 8475259 ~ 8475340 (-) True trnal-uag_3
trnap-agg_9 other downstream 619170 8458327 ~ 8458396 (-) True trnap-agg_9
trnaa-cgc_2 other upstream 1339 9078986 ~ 9079057 (-) True trnaa-cgc_2
trnaa-cgc_3 other upstream 3363 9081010 ~ 9081081 (-) True trnaa-cgc_3
trnal-uag_5 other upstream 3529 9081176 ~ 9081257 (-) True trnal-uag_5
trnal-uag_6 other upstream 4278 9081925 ~ 9082006 (-) True trnal-uag_6
trnal-aag_4 other upstream 5212 9082859 ~ 9082940 (-) True trnal-aag_4