Item | Value |
---|---|
RNA id | trnai-uau_5 |
length | 74 |
RNA type | tRNA |
GC content | 0.57 |
exon number | 2 |
gene id | trnai-uau_5 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047606.1 |
NCBI id | CM018552.1 |
chromosome length | 26563515 |
location | 5302113 ~ 5302205 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU226166 | lncRNA | downstream | 383136 | 4911734 ~ 4918977 (-) | True | trnap-cgg_3 |
TU225963 | lncRNA | downstream | 551236 | 4701104 ~ 4750877 (-) | True | G190885 |
TU225914 | lncRNA | downstream | 635542 | 4666312 ~ 4666571 (-) | True | G190849 |
TU225890 | lncRNA | downstream | 705290 | 4596539 ~ 4596823 (-) | True | G190829 |
TU225878 | lncRNA | downstream | 726583 | 4573682 ~ 4575530 (-) | True | G190821 |
TU226433 | lncRNA | upstream | 80790 | 5382995 ~ 5387137 (-) | True | G191279 |
TU226592 | lncRNA | upstream | 140757 | 5442962 ~ 5445167 (-) | True | G191413 |
TU226604 | lncRNA | upstream | 180415 | 5482620 ~ 5484667 (-) | True | G191424 |
TU226605 | lncRNA | upstream | 186612 | 5488817 ~ 5489111 (-) | False | gdpd3b |
TU226650 | lncRNA | upstream | 363968 | 5666173 ~ 5667846 (-) | True | G191463 |
XM_026914669.2 | mRNA | downstream | 7715 | 5289712 ~ 5294398 (-) | True | tmem101 |
XM_026914728.2 | mRNA | downstream | 36756 | 5256264 ~ 5265357 (-) | True | g6pc3 |
XM_026914518.2 | mRNA | downstream | 238695 | 5059498 ~ 5063418 (-) | True | LOC113527048 |
XM_034309046.1 | mRNA | downstream | 303781 | 4991942 ~ 4998332 (-) | True | pagr1 |
XM_026915586.2 | mRNA | downstream | 452435 | 4837911 ~ 4849678 (-) | True | fam20a |
XM_034309110.1 | mRNA | upstream | 10039 | 5312244 ~ 5322475 (-) | True | LOC113527073 |
XM_026915784.2 | mRNA | upstream | 102977 | 5405182 ~ 5416607 (-) | True | sgca |
XM_034309354.1 | mRNA | upstream | 144267 | 5446472 ~ 5456359 (-) | True | lrrc45 |
XM_026915826.2 | mRNA | upstream | 182486 | 5484691 ~ 5490925 (-) | True | gdpd3b |
XM_026914514.2 | mRNA | upstream | 200218 | 5502423 ~ 5509397 (-) | True | prodh2 |
TU226226 | other | downstream | 238718 | 5059527 ~ 5063395 (-) | False | LOC113527048 |
TU226185 | other | downstream | 349254 | 4949163 ~ 4952859 (-) | True | G191056 |
trnap-cgg_3 | other | downstream | 383141 | 4918901 ~ 4918972 (-) | False | trnap-cgg_3 |
trnap-agg_4 | other | downstream | 384226 | 4917816 ~ 4917887 (-) | True | trnap-agg_4 |
trnap-ugg_13 | other | downstream | 386537 | 4915505 ~ 4915576 (-) | True | trnap-ugg_13 |
trnav-uac_7 | other | upstream | 171193 | 5473398 ~ 5473470 (-) | True | trnav-uac_7 |
TU226617 | other | upstream | 308915 | 5611120 ~ 5613954 (-) | True | G191430 |
TU226699 | other | upstream | 466323 | 5768528 ~ 5776020 (-) | False | LOC113527291 |
XR_004579320.1 | other | upstream | 1245866 | 6548071 ~ 6594390 (-) | False | itga3b |
trnap-agg_9 | other | upstream | 3156122 | 8458327 ~ 8458396 (-) | True | trnap-agg_9 |