RNA id: trnal-aag_8


Basic Information

Item Value
RNA id trnal-aag_8
length 82
RNA type tRNA
GC content 0.65
exon number 1
gene id trnal-aag_8
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10064545 ~ 10064626 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgcgtgggttcgaatcccaccgcTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 237681 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 240077 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 283590 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 399029 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 411285 9652172 ~ 9653260 (+) True G193542
XR_004579148.1 lncRNA downstream 79727 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 160076 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 260330 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 261014 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 268280 10332906 ~ 10336247 (+) False G193828
XM_034309422.1 mRNA upstream 2306 10053473 ~ 10062239 (+) False slc16a12b
XM_034309423.1 mRNA upstream 2306 10053473 ~ 10062239 (+) False slc16a12b
XM_026915284.2 mRNA upstream 2306 10053474 ~ 10062239 (+) False slc16a12b
XM_026915283.2 mRNA upstream 2306 10054015 ~ 10062239 (+) True slc16a12b
XM_026915398.2 mRNA upstream 11351 10043909 ~ 10053194 (+) True pank1b
XM_026914636.2 mRNA downstream 12391 10077017 ~ 10078115 (+) True ch25h
XM_026915769.2 mRNA downstream 32743 10097369 ~ 10101788 (+) True acta2
XM_026915532.2 mRNA downstream 54262 10118888 ~ 10124842 (+) True ankrd22
XM_026915533.2 mRNA downstream 54561 10119187 ~ 10124842 (+) False ankrd22
XM_026915217.2 mRNA downstream 71290 10135916 ~ 10166915 (+) False rnls
XR_003402888.1 other upstream 429478 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 550710 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 551914 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 552305 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 554749 9509724 ~ 9509796 (+) True trnar-ccu_4
trnaq-cug_16 other downstream 1221571 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2408057 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3418675 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3418675 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6791144 16855770 ~ 16863495 (+) False anapc16