RNA id: trnap-agg_3



Basic Information


Item Value
RNA id trnap-agg_3
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-agg_3
representative True

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4908368 ~ 4908439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU225963 lncRNA downstream 157491 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 241797 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 311545 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 332838 4573682 ~ 4575530 (-) True G190821
TU225794 lncRNA downstream 619565 4288417 ~ 4288803 (-) True G190742
TU226166 lncRNA upstream 3295 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226433 lncRNA upstream 474556 5382995 ~ 5387137 (-) True G191279
TU226592 lncRNA upstream 534523 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 574181 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 580378 5488817 ~ 5489111 (-) False gdpd3b
XM_026915586.2 mRNA downstream 58690 4837911 ~ 4849678 (-) True fam20a
XM_034309628.1 mRNA downstream 81016 4810652 ~ 4827352 (-) False zdhhc16b
XM_026915838.2 mRNA downstream 87783 4810652 ~ 4820585 (-) False zdhhc16b
XM_026915839.2 mRNA downstream 90677 4810652 ~ 4817691 (-) True zdhhc16b
XM_034309184.1 mRNA downstream 120792 4770544 ~ 4787576 (-) True ubtd1b
XM_034309046.1 mRNA upstream 83503 4991942 ~ 4998332 (-) True pagr1
XM_026914518.2 mRNA upstream 151059 5059498 ~ 5063418 (-) True LOC113527048
XM_026914728.2 mRNA upstream 347825 5256264 ~ 5265357 (-) True g6pc3
XM_026914669.2 mRNA upstream 381273 5289712 ~ 5294398 (-) True tmem101
XM_034309110.1 mRNA upstream 403805 5312244 ~ 5322475 (-) True LOC113527073
trnap-ugg_8 other downstream 1116 4907183 ~ 4907252 (-) True trnap-ugg_8
trnap-ugg_7 other downstream 2303 4905995 ~ 4906065 (-) True trnap-ugg_7
trnap-ugg_6 other downstream 3490 4904808 ~ 4904878 (-) True trnap-ugg_6
trnap-ugg_5 other downstream 4677 4903621 ~ 4903691 (-) True trnap-ugg_5
trnap-ugg_4 other downstream 5969 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_9 other upstream 1120 4909559 ~ 4909630 (-) True trnap-ugg_9
trnap-ugg_10 other upstream 3499 4911938 ~ 4912008 (-) True trnap-ugg_10
trnap-ugg_11 other upstream 4687 4913126 ~ 4913197 (-) True trnap-ugg_11
trnap-ugg_12 other upstream 5877 4914316 ~ 4914386 (-) True trnap-ugg_12
trnap-ugg_13 other upstream 7066 4915505 ~ 4915576 (-) True trnap-ugg_13