RNA id: trnap-agg_9


Basic Information

Item Value
RNA id trnap-agg_9
length 70
RNA type tRNA
GC content 0.59
exon number 1
gene id trnap-agg_9
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8458327 ~ 8458396 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGGTCCCGGGTTCAAATCCAGGACGAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228459 lncRNA downstream 3024 8452197 ~ 8455303 (-) True G192948
TU228447 lncRNA downstream 22243 8429304 ~ 8436084 (-) True G192937
TU228380 lncRNA downstream 74728 8379227 ~ 8383599 (-) True G192881
TU228139 lncRNA downstream 331770 8071922 ~ 8126557 (-) True G192685
TU228135 lncRNA downstream 362970 8090685 ~ 8095357 (-) True G192681
TU228456 lncRNA upstream 5913 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA upstream 22024 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA upstream 25212 8483608 ~ 8485178 (-) True G192954
TU228680 lncRNA upstream 469585 8927981 ~ 8928648 (-) True G193138
TU228880 lncRNA upstream 696046 9154442 ~ 9156287 (-) True G193315
XM_026915448.2 mRNA downstream 7865 8447927 ~ 8450462 (-) True snu13b
XM_026915273.2 mRNA downstream 12648 8440187 ~ 8445679 (-) True crym
XM_026914925.2 mRNA downstream 155908 8301334 ~ 8302419 (-) True LOC113527290
XM_026914611.2 mRNA downstream 175465 8269591 ~ 8282862 (-) True adam8b
XM_026915591.2 mRNA downstream 197217 8207944 ~ 8261110 (-) False exoc6
XM_026914607.2 mRNA upstream 56165 8514561 ~ 8521374 (-) True si:ch1073-272o11.3
XM_026914608.2 mRNA upstream 56165 8514561 ~ 8519798 (-) False si:ch1073-272o11.3
XM_026915557.2 mRNA upstream 216333 8674729 ~ 8678396 (-) True wfikkn2b
XM_026915886.2 mRNA upstream 234863 8693259 ~ 8746106 (-) True abcc3
XM_026915887.2 mRNA upstream 234863 8693259 ~ 8746106 (-) False abcc3
XR_004579320.1 other downstream 1863937 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2682307 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2844373 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2984857 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 3156122 5302113 ~ 5302205 (-) True trnai-uau_5
trnal-uag_3 other upstream 16863 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 389266 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 618393 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 618722 9077118 ~ 9077199 (-) True trnal-uag_4
trnaf-aaa other upstream 619170 9077566 ~ 9077647 (-) True trnaf-aaa