RNA id: trnap-cgg_7


Basic Information

Item Value
RNA id trnap-cgg_7
length 72
RNA type tRNA
GC content 0.63
exon number 1
gene id trnap-cgg_7
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6789874 ~ 6789945 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227373 lncRNA upstream 4278 6778164 ~ 6785596 (+) True G192043
TU227359 lncRNA upstream 61483 6725985 ~ 6728391 (+) True LOC113527389
TU227354 lncRNA upstream 92904 6696732 ~ 6696970 (+) True G192029
TU227167 lncRNA upstream 316408 6463389 ~ 6473466 (+) True G191868
TU227164 lncRNA upstream 328860 6460811 ~ 6461014 (+) True G191866
TU227745 lncRNA downstream 609398 7399343 ~ 7399628 (+) True G192394
TU227775 lncRNA downstream 684492 7474437 ~ 7475004 (+) True G192422
TU228011 lncRNA downstream 1149096 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 1279198 8069143 ~ 8071592 (+) True G192650
TU228069 lncRNA downstream 1336828 8126773 ~ 8141060 (+) True G192644
XM_026915155.2 mRNA upstream 32736 6754193 ~ 6757138 (+) True g6pca.2
XM_026915158.2 mRNA upstream 44073 6739753 ~ 6745801 (+) True ptges3l
XM_026915161.2 mRNA upstream 61730 6725327 ~ 6728144 (+) False LOC113527389
XM_026915160.2 mRNA upstream 63056 6725327 ~ 6726818 (+) False LOC113527389
XM_026914756.2 mRNA upstream 167227 6618651 ~ 6622647 (+) True dlx3b
XM_026915438.2 mRNA downstream 6062 6796007 ~ 6815445 (+) True sgms1
XM_026915437.2 mRNA downstream 6062 6796007 ~ 6815445 (+) False sgms1
XM_026915436.2 mRNA downstream 15233 6805178 ~ 6815445 (+) False sgms1
XM_026914654.2 mRNA downstream 32795 6822740 ~ 6836383 (+) True asah2
XM_026915240.2 mRNA downstream 72126 6862071 ~ 7015737 (+) False prkg1b
trnap-ugg_20 other upstream 1108 6788695 ~ 6788766 (+) True trnap-ugg_20
trnap-agg_8 other upstream 2272 6787531 ~ 6787602 (+) True trnap-agg_8
trnap-cgg_6 other upstream 3451 6786352 ~ 6786423 (+) True trnap-cgg_6
trnap-ugg_19 other upstream 4608 6785195 ~ 6785266 (+) True trnap-ugg_19
trnap-agg_7 other upstream 5789 6784014 ~ 6784085 (+) True trnap-agg_7
XR_003402840.2 other downstream 32795 6822740 ~ 6834257 (+) False asah2
TU227741 other downstream 638634 7428579 ~ 7436372 (+) True tfam
TU227843 other downstream 816036 7605981 ~ 7628111 (+) True G192484
trnaa-ugc_7 other downstream 2317741 9107686 ~ 9107757 (+) True trnaa-ugc_7
trnal-aag_6 other downstream 2317907 9107852 ~ 9107933 (+) True trnal-aag_6