RNA id: trnap-ugg_16


Basic Information

Item Value
RNA id trnap-ugg_16
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-ugg_16
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6775906 ~ 6775977 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227359 lncRNA upstream 47515 6725985 ~ 6728391 (+) True LOC113527389
TU227354 lncRNA upstream 78936 6696732 ~ 6696970 (+) True G192029
TU227167 lncRNA upstream 302440 6463389 ~ 6473466 (+) True G191868
TU227164 lncRNA upstream 314892 6460811 ~ 6461014 (+) True G191866
TU226989 lncRNA upstream 505021 6268524 ~ 6270885 (+) True G191719
TU227373 lncRNA downstream 2187 6778164 ~ 6785596 (+) True G192043
TU227745 lncRNA downstream 623366 7399343 ~ 7399628 (+) True G192394
TU227775 lncRNA downstream 698460 7474437 ~ 7475004 (+) True G192422
TU228011 lncRNA downstream 1163064 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 1293166 8069143 ~ 8071592 (+) True G192650
XM_026915155.2 mRNA upstream 18768 6754193 ~ 6757138 (+) True g6pca.2
XM_026915158.2 mRNA upstream 30105 6739753 ~ 6745801 (+) True ptges3l
XM_026915161.2 mRNA upstream 47762 6725327 ~ 6728144 (+) False LOC113527389
XM_026915160.2 mRNA upstream 49088 6725327 ~ 6726818 (+) False LOC113527389
XM_026914756.2 mRNA upstream 153259 6618651 ~ 6622647 (+) True dlx3b
XM_026915438.2 mRNA downstream 20030 6796007 ~ 6815445 (+) True sgms1
XM_026915437.2 mRNA downstream 20030 6796007 ~ 6815445 (+) False sgms1
XM_026915436.2 mRNA downstream 29201 6805178 ~ 6815445 (+) False sgms1
XM_026914654.2 mRNA downstream 46763 6822740 ~ 6836383 (+) True asah2
XM_026915240.2 mRNA downstream 86094 6862071 ~ 7015737 (+) False prkg1b
trnap-ugg_15 other upstream 1079 6774756 ~ 6774827 (+) True trnap-ugg_15
trnal-uag_1 other upstream 2232 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_14 other upstream 3394 6772441 ~ 6772512 (+) True trnap-ugg_14
trnap-cgg_4 other upstream 4528 6771307 ~ 6771378 (+) True trnap-cgg_4
TU227356 other upstream 47515 6725321 ~ 6728391 (+) False LOC113527389
trnap-agg_5 other downstream 1100 6777077 ~ 6777148 (+) True trnap-agg_5
trnap-ugg_17 other downstream 2249 6778226 ~ 6778297 (+) True trnap-ugg_17
trnap-ugg_18 other downstream 3407 6779384 ~ 6779455 (+) True trnap-ugg_18
trnap-cgg_5 other downstream 4567 6780544 ~ 6780615 (+) True trnap-cgg_5
trnal-uag_2 other downstream 5729 6781706 ~ 6781777 (+) True trnal-uag_2