RNA id: trnap-ugg_17


Basic Information

Item Value
RNA id trnap-ugg_17
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-ugg_17
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6778226 ~ 6778297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227359 lncRNA upstream 49835 6725985 ~ 6728391 (+) True LOC113527389
TU227354 lncRNA upstream 81256 6696732 ~ 6696970 (+) True G192029
TU227167 lncRNA upstream 304760 6463389 ~ 6473466 (+) True G191868
TU227164 lncRNA upstream 317212 6460811 ~ 6461014 (+) True G191866
TU226989 lncRNA upstream 507341 6268524 ~ 6270885 (+) True G191719
TU227745 lncRNA downstream 621046 7399343 ~ 7399628 (+) True G192394
TU227775 lncRNA downstream 696140 7474437 ~ 7475004 (+) True G192422
TU228011 lncRNA downstream 1160744 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 1290846 8069143 ~ 8071592 (+) True G192650
TU228069 lncRNA downstream 1348476 8126773 ~ 8141060 (+) True G192644
XM_026915155.2 mRNA upstream 21088 6754193 ~ 6757138 (+) True g6pca.2
XM_026915158.2 mRNA upstream 32425 6739753 ~ 6745801 (+) True ptges3l
XM_026915161.2 mRNA upstream 50082 6725327 ~ 6728144 (+) False LOC113527389
XM_026915160.2 mRNA upstream 51408 6725327 ~ 6726818 (+) False LOC113527389
XM_026914756.2 mRNA upstream 155579 6618651 ~ 6622647 (+) True dlx3b
XM_026915438.2 mRNA downstream 17710 6796007 ~ 6815445 (+) True sgms1
XM_026915437.2 mRNA downstream 17710 6796007 ~ 6815445 (+) False sgms1
XM_026915436.2 mRNA downstream 26881 6805178 ~ 6815445 (+) False sgms1
XM_026914654.2 mRNA downstream 44443 6822740 ~ 6836383 (+) True asah2
XM_026915240.2 mRNA downstream 83774 6862071 ~ 7015737 (+) False prkg1b
trnap-agg_5 other upstream 1078 6777077 ~ 6777148 (+) True trnap-agg_5
trnap-ugg_16 other upstream 2249 6775906 ~ 6775977 (+) True trnap-ugg_16
trnap-ugg_15 other upstream 3399 6774756 ~ 6774827 (+) True trnap-ugg_15
trnal-uag_1 other upstream 4552 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_14 other upstream 5714 6772441 ~ 6772512 (+) True trnap-ugg_14
trnap-ugg_18 other downstream 1087 6779384 ~ 6779455 (+) True trnap-ugg_18
trnap-cgg_5 other downstream 2247 6780544 ~ 6780615 (+) True trnap-cgg_5
trnal-uag_2 other downstream 3409 6781706 ~ 6781777 (+) True trnal-uag_2
trnap-agg_6 other downstream 4563 6782860 ~ 6782931 (+) True trnap-agg_6
trnap-agg_7 other downstream 5717 6784014 ~ 6784085 (+) True trnap-agg_7