RNA id: trnap-ugg_19


Basic Information

Item Value
RNA id trnap-ugg_19
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-ugg_19
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6785195 ~ 6785266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227359 lncRNA upstream 56804 6725985 ~ 6728391 (+) True LOC113527389
TU227354 lncRNA upstream 88225 6696732 ~ 6696970 (+) True G192029
TU227167 lncRNA upstream 311729 6463389 ~ 6473466 (+) True G191868
TU227164 lncRNA upstream 324181 6460811 ~ 6461014 (+) True G191866
TU226989 lncRNA upstream 514310 6268524 ~ 6270885 (+) True G191719
TU227745 lncRNA downstream 614077 7399343 ~ 7399628 (+) True G192394
TU227775 lncRNA downstream 689171 7474437 ~ 7475004 (+) True G192422
TU228011 lncRNA downstream 1153775 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 1283877 8069143 ~ 8071592 (+) True G192650
TU228069 lncRNA downstream 1341507 8126773 ~ 8141060 (+) True G192644
XM_026915155.2 mRNA upstream 28057 6754193 ~ 6757138 (+) True g6pca.2
XM_026915158.2 mRNA upstream 39394 6739753 ~ 6745801 (+) True ptges3l
XM_026915161.2 mRNA upstream 57051 6725327 ~ 6728144 (+) False LOC113527389
XM_026915160.2 mRNA upstream 58377 6725327 ~ 6726818 (+) False LOC113527389
XM_026914756.2 mRNA upstream 162548 6618651 ~ 6622647 (+) True dlx3b
XM_026915438.2 mRNA downstream 10741 6796007 ~ 6815445 (+) True sgms1
XM_026915437.2 mRNA downstream 10741 6796007 ~ 6815445 (+) False sgms1
XM_026915436.2 mRNA downstream 19912 6805178 ~ 6815445 (+) False sgms1
XM_026914654.2 mRNA downstream 37474 6822740 ~ 6836383 (+) True asah2
XM_026915240.2 mRNA downstream 76805 6862071 ~ 7015737 (+) False prkg1b
trnap-agg_7 other upstream 1110 6784014 ~ 6784085 (+) True trnap-agg_7
trnap-agg_6 other upstream 2264 6782860 ~ 6782931 (+) True trnap-agg_6
trnal-uag_2 other upstream 3418 6781706 ~ 6781777 (+) True trnal-uag_2
trnap-cgg_5 other upstream 4580 6780544 ~ 6780615 (+) True trnap-cgg_5
trnap-ugg_18 other upstream 5740 6779384 ~ 6779455 (+) True trnap-ugg_18
trnap-cgg_6 other downstream 1086 6786352 ~ 6786423 (+) True trnap-cgg_6
trnap-agg_8 other downstream 2265 6787531 ~ 6787602 (+) True trnap-agg_8
trnap-ugg_20 other downstream 3429 6788695 ~ 6788766 (+) True trnap-ugg_20
trnap-cgg_7 other downstream 4608 6789874 ~ 6789945 (+) True trnap-cgg_7
XR_003402840.2 other downstream 37474 6822740 ~ 6834257 (+) False asah2