RNA id: trnaq-cug_14


Basic Information

Item Value
RNA id trnaq-cug_14
length 72
RNA type tRNA
GC content 0.51
exon number 1
gene id trnaq-cug_14
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9512560 ~ 9512631 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229030 lncRNA upstream 159 9512185 ~ 9512401 (+) True trnaq-cug_13
TU228960 lncRNA upstream 126166 9386143 ~ 9386394 (+) True G193390
TU228956 lncRNA upstream 132445 9379273 ~ 9380115 (+) True G193386
TU228720 lncRNA upstream 328471 9159433 ~ 9184089 (+) True G193168
TU228721 lncRNA upstream 353992 9158159 ~ 9158568 (+) True G193169
TU229031 lncRNA downstream 190 9512821 ~ 9515462 (+) False mrpl58
TU229034 lncRNA downstream 3290 9515921 ~ 9516139 (+) True G193458
TU229098 lncRNA downstream 74534 9587165 ~ 9587819 (+) True G193509
TU229133 lncRNA downstream 139541 9652172 ~ 9653260 (+) True G193542
TU229145 lncRNA downstream 151299 9663930 ~ 9665516 (+) False arhgap23b
XM_034309459.1 mRNA upstream 154599 9268493 ~ 9357961 (+) True LOC113527534
XM_034309460.1 mRNA upstream 154599 9315978 ~ 9357961 (+) False LOC113527534
XM_026914687.2 mRNA upstream 356272 9142501 ~ 9156288 (+) True map2k4b
XM_034309073.1 mRNA upstream 373160 9135203 ~ 9139400 (+) False adprm
XM_026914917.2 mRNA downstream 153 9512784 ~ 9515616 (+) True mrpl58
XM_026915708.2 mRNA downstream 10725 9523356 ~ 9559377 (+) True LOC113527682
XM_026915937.2 mRNA downstream 93500 9606131 ~ 9627459 (+) True plxdc1
XM_026915939.2 mRNA downstream 93500 9606131 ~ 9627459 (+) False plxdc1
XM_026914963.2 mRNA downstream 118034 9630665 ~ 9643176 (+) True LOC113527304
trnaq-cug_13 other upstream 320 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 2764 9509724 ~ 9509796 (+) True trnar-ccu_4
TU228953 other upstream 142645 9368243 ~ 9369915 (+) True G193383
TU228915 other upstream 241229 9268642 ~ 9271331 (+) False LOC113527534
trnad-guc_5 other upstream 246226 9266263 ~ 9266334 (+) True trnad-guc_5
trnaq-cug_15 other downstream 1133 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_003402888.1 other downstream 122246 9634877 ~ 9635067 (+) True LOC113527805
trnal-aag_8 other downstream 551914 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1773566 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2960052 12472683 ~ 12473739 (+) False LOC113527673