RNA id: trnaq-cug_16


Basic Information

Item Value
RNA id trnaq-cug_16
length 72
RNA type tRNA
GC content 0.50
exon number 1
gene id trnaq-cug_16
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11286197 ~ 11286268 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230242 lncRNA upstream 38090 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 79221 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 165647 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 190019 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 222515 11062164 ~ 11063682 (+) True G194365
TU230438 lncRNA downstream 92193 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 306624 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 311262 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 328121 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 432629 11718897 ~ 11719113 (+) True G194748
XM_026915923.2 mRNA upstream 7542 11273129 ~ 11278655 (+) True chadlb
XM_026914613.2 mRNA upstream 13751 11265411 ~ 11272446 (+) True rangap1b
XM_034309360.1 mRNA upstream 37984 11233590 ~ 11248213 (+) True si:ch73-139e5.4
XM_034309083.1 mRNA upstream 54450 11227745 ~ 11231747 (+) False csdc2a
XM_026914744.2 mRNA upstream 54450 11227747 ~ 11231747 (+) True csdc2a
XM_026914597.2 mRNA downstream 4785 11291053 ~ 11314637 (+) True ep300a
XM_026914603.2 mRNA downstream 4785 11291053 ~ 11314637 (+) False ep300a
XM_026914604.2 mRNA downstream 4785 11291053 ~ 11314637 (+) False ep300a
XM_026914601.2 mRNA downstream 5031 11291299 ~ 11314637 (+) False ep300a
XM_026914599.2 mRNA downstream 5031 11291299 ~ 11314637 (+) False ep300a
trnal-aag_8 other upstream 1221571 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1651130 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1772362 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1773566 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1773957 9512169 ~ 9512240 (+) False trnaq-cug_13
TU231182 other downstream 1186415 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2197033 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2197033 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5569502 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6291015 17577283 ~ 17577376 (+) True trnai-uau_6