RNA id: trnas-gcu_3


Basic Information

Item Value
RNA id trnas-gcu_3
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-gcu_3
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6225104 ~ 6225185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGAGGTGGCCGAGAGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccaccctCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226978 lncRNA upstream 8010 6215273 ~ 6217094 (+) True G191711
TU226826 lncRNA upstream 169899 6001068 ~ 6055205 (+) True G191595
TU226822 lncRNA upstream 276518 5946225 ~ 5948586 (+) True G191591
TU226819 lncRNA upstream 284257 5940621 ~ 5940847 (+) True G191588
TU226794 lncRNA upstream 316928 5906464 ~ 5908176 (+) True G191568
TU226989 lncRNA downstream 43339 6268524 ~ 6270885 (+) True G191719
TU227164 lncRNA downstream 235626 6460811 ~ 6461014 (+) True G191866
TU227167 lncRNA downstream 238204 6463389 ~ 6473466 (+) True G191868
TU227354 lncRNA downstream 471547 6696732 ~ 6696970 (+) True G192029
TU227359 lncRNA downstream 500800 6725985 ~ 6728391 (+) True LOC113527389
XM_026915507.2 mRNA upstream 10759 6186234 ~ 6214345 (+) True arhgap27
XM_034309480.1 mRNA upstream 10759 6186234 ~ 6214345 (+) False arhgap27
XM_026915508.2 mRNA upstream 10759 6186234 ~ 6214345 (+) False arhgap27
XM_026915341.2 mRNA upstream 40740 6168866 ~ 6184364 (+) True plekhm1
XM_026914713.2 mRNA upstream 151014 6069419 ~ 6074090 (+) True cd79b
XM_026914642.2 mRNA downstream 16358 6241543 ~ 6251999 (+) True kif22
XM_026914749.2 mRNA downstream 28763 6253948 ~ 6259961 (+) True prrt2
XM_026914750.2 mRNA downstream 28763 6253948 ~ 6259961 (+) False prrt2
XM_026915428.2 mRNA downstream 36485 6261670 ~ 6268234 (+) True cep55l
XM_026915429.2 mRNA downstream 36490 6261675 ~ 6268234 (+) False cep55l
trnal-aag_3 other upstream 998 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 1487 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-uag other upstream 2306 6222717 ~ 6222798 (+) True trnal-uag
trnal-aag_2 other upstream 8656 6216367 ~ 6216448 (+) True trnal-aag_2
trnas-gcu_1 other upstream 9178 6215845 ~ 6215926 (+) True trnas-gcu_1
trnas-gcu_4 other downstream 5037 6230222 ~ 6230303 (+) True trnas-gcu_4
TU227356 other downstream 500136 6725321 ~ 6728391 (+) False LOC113527389
trnap-cgg_4 other downstream 546122 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 547256 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 548418 6773603 ~ 6773674 (+) True trnal-uag_1