RNA id: trnas-gcu_4


Basic Information

Item Value
RNA id trnas-gcu_4
length 82
RNA type tRNA
GC content 0.56
exon number 1
gene id trnas-gcu_4
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6230222 ~ 6230303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGAGGTGGCCGAGAGGTTAAGGTGATGGACTGCTAATCCATTGTGCTCTGCATGCGTGGGTTTGAATCCTCCCCTCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226978 lncRNA upstream 13128 6215273 ~ 6217094 (+) True G191711
TU226826 lncRNA upstream 175017 6001068 ~ 6055205 (+) True G191595
TU226822 lncRNA upstream 281636 5946225 ~ 5948586 (+) True G191591
TU226819 lncRNA upstream 289375 5940621 ~ 5940847 (+) True G191588
TU226794 lncRNA upstream 322046 5906464 ~ 5908176 (+) True G191568
TU226989 lncRNA downstream 38221 6268524 ~ 6270885 (+) True G191719
TU227164 lncRNA downstream 230508 6460811 ~ 6461014 (+) True G191866
TU227167 lncRNA downstream 233086 6463389 ~ 6473466 (+) True G191868
TU227354 lncRNA downstream 466429 6696732 ~ 6696970 (+) True G192029
TU227359 lncRNA downstream 495682 6725985 ~ 6728391 (+) True LOC113527389
XM_026915507.2 mRNA upstream 15877 6186234 ~ 6214345 (+) True arhgap27
XM_034309480.1 mRNA upstream 15877 6186234 ~ 6214345 (+) False arhgap27
XM_026915508.2 mRNA upstream 15877 6186234 ~ 6214345 (+) False arhgap27
XM_026915341.2 mRNA upstream 45858 6168866 ~ 6184364 (+) True plekhm1
XM_026914713.2 mRNA upstream 156132 6069419 ~ 6074090 (+) True cd79b
XM_026914642.2 mRNA downstream 11240 6241543 ~ 6251999 (+) True kif22
XM_026914749.2 mRNA downstream 23645 6253948 ~ 6259961 (+) True prrt2
XM_026914750.2 mRNA downstream 23645 6253948 ~ 6259961 (+) False prrt2
XM_026915428.2 mRNA downstream 31367 6261670 ~ 6268234 (+) True cep55l
XM_026915429.2 mRNA downstream 31372 6261675 ~ 6268234 (+) False cep55l
trnas-gcu_3 other upstream 5037 6225104 ~ 6225185 (+) True trnas-gcu_3
trnal-aag_3 other upstream 6116 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 6605 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-uag other upstream 7424 6222717 ~ 6222798 (+) True trnal-uag
trnal-aag_2 other upstream 13774 6216367 ~ 6216448 (+) True trnal-aag_2
TU227356 other downstream 495018 6725321 ~ 6728391 (+) False LOC113527389
trnap-cgg_4 other downstream 541004 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 542138 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 543300 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_15 other downstream 544453 6774756 ~ 6774827 (+) True trnap-ugg_15