RNA id: TU23548


Basic Information

Item Value
RNA id TU23548
length 3817
RNA type TUCP
GC content 0.44
exon number 3
gene id slc48a1b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 1028827 ~ 1037596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGGTTATAAACACAGCCATGAGCAGCTGGTGAACCGCGCAGGCTGGAAATAAAGCGGCTTTGGGATTAAACCGGAACCTCAGAGAGCTGCAGGATCCGCTGAGTCTCCGCCACAGCGACATGTTCACAGCTAACAGCGGGTGAAGTGGAATTTTAGAggtttaatgaaataattaaaggtGAAATGGCGCTCAGGAAGACGTACATCAGTGTGGGTTACTCCTGTGTCGGGGTCCTGGTGGGATTTTCTGCTTTCCTGGTGTGGAACATCGTCTACAGACAGCCCTGGACCTCCGCCATGGGAGGATTATCAGgggtgttgGCGCTCTGGAGCCTCATCACTCACGTCATGTACCTGCAGGACTACTGGAGAACGTGGCTGAAGGGTCTGAAGTTCTTTCTGTTCGTGGGCGTGTTTTTCTCCGTGCTCTCCTTCATCGCCTTCTTCTGCTTCCTGTCGGTGGCCGTCTCGCGTAGAGAGTcgctGAAGGACCCTAACAGCCTGTACCTGTCGTGTGTGTGGAGCTTCATGAGTCTGAAGTGGGCGTTCCTCCTGAGCCTGTACTCTCGCCGTTATCACAAAGAGTTCGCCGACATCGCCATCCTCAGCgacttctaacacacacacacacacacacacacacacacacacacacacacacttacgcacacacactcaagcatGAACACACTTATCTCACAGGTTGAACAGTTCTCGCTTCTGTTTTTATAACGCTGTGAGGATGAAGGGGTGATGAGCGGTTGTTGTGAAgagattaaaggaaaactccagcgtttttattattattattattattattattattattgttattattttatccttatctctctctccactgtatCTGTAATGTATGTGATTACAGCATGGATGAGAATTTCATCACGTTTCCCTGCactgatgggaaaaaaaaacagaaaacgtGTTTTACGGCAAACTCTTTTCTAACAGAAGTCAAGGGGCAGATGTTTAAAGTGGAAATCTTCTCTTAAAGCTGTTTAACTGAGTAAGAGCGCAGATCCTTAGCGATAGATTTCATGATCTTTTTTAGCACTTtatatttgcactttattttatcTCTGATTAAATCGAGTGCCTGTTCAGGGGATCCCTGGTTATCCACAGCAGCCTGCTAACGCTAGTTATCCTGCTAACGCTAGTTATCCTGCTAACGCTAGCTCCAGGAGGAAACAATATGATTTCTTATGCTGAGTTGCCAAagtatgtaaacttttttaaTCCCTTCAGCTTCATAAAACCAGAAATGCTCCCAAATTCCATCTTTTAAAGACGAAAGTGCTGATTTCACGTCTTGGCGTGGAAAGTTCTGACTGTTTGCCTTCTCCGATgaaatctctccatctctccttctGCGTAGCTCTACGTCTGCGTAGCTACACAACTTCTGGAATCGGCTgaattttaaacaaacagaagTTAAAGAGTTTGGTACGAATTTTGCTTTTAATGATCAATTCTTAAGTTTCTTTTGCGTCGATGTAGAATCTTTAAGAAACGCATCGCAACGCATCGTACAACTTCCCTCACCTTTAATAACGCCTtgtggttaccgtaaaacccttaacacacacacacacacacacacacacacacaagtttctACTTTAGACAAGCGCTTTGTGaaagaatgattttaaaaatgtacgaCGTTTCTCCTACGCTTTATTCCTCTTCAAGGCTGTCAGGTCTGTTTGGTATAAAATGAGTATAAAATACCACAAAACTTTCAGGAAAGTGTAAACTTTGACCCGGAACTACTTTTTACTTCACTACTGTgttgctgcagtgtgtgaaagTTGAAGATAAATGTCCATAAGTGCAGATTTGTCTCATGCTGTAGTTATAtagttaaatgtgtgtgtgtgtgtgtgtgtgtgttatagtcgcgtaatttaaatgtttaaatgtttatcacTGTAATTCAGCAGCTGCCCCTAGACTTCCATTATGGCTGAATTGGCAgtaaactgttttgttttctgttttcttttttttgttttgttttgtttggaaaGGTGTTGaaatttttgtatatattatattgtaattttacacacacacacacacacacacacacacacacacacaaacagtgctTTAGGATTatcgggaaaaaaaaacaaaacgctgGAGTTGTCCTTTAATGCAGGTTGTATGACgtttgatagattttattagCGTGACGCTGCCGGGTGCTTTAATCTACTTTTATATAATCGTGTGATGAACCTAGGGGGCATTTCTAAGCCTTTGGCAGTTAAAAATTGTCAAAAAAATGAagacattaatttttttttttcgctttttAAGAAAGGCGTGGCTACGGAGCGTTGCTGGTGATGTCACTACTTCATAAAAATACTGCGTGACCGTGAGTAAGATAATTAAATATGGCGTGATCGTCGTGTTGTGActacagtctggagtgtgtatatatatacacaaggtTTTACGGTAACCATGGTGACTGTAGCATGTATATGGACATGACTGTGTACGCAATGTAGAGGTTAGAAAAGTTCACATTTTAggttatgaattattattaattactgtatgtaatatttttttcttaaaacatAGAAACATCTAAAAGATAGAAAACATCTGTTCTGTAGACTACAATGTCATAGTTTCGTTTTATTGAAGCTATTTTTCCGTGTATAATTTTCCAATTTGTCTCAGTAAATGGATTTCATACTAAAGAACAATTCATTACACATCGTACTATTAATAatttgtctattttattttctgtttccatAAAAATCGATTGCTTTAATTGAACAAACTTGCGCAAAGTgaacattatattttaataggAAAAGATGTTGCATACAGAAATTaatgagaaggtgtgtgtgtaaccttTTCTAGTGTCTACTAGCTAAACTTAGCTAGCTTAACTAATACAGCTAGTCGGGTTTTTACCTCCCAGGCACCTGGTGTTTAAAGTAAAACATCGTATATATGTGCACTTCTGTTTGGAGGAACAAAAACAACGATCACAGCTTATTAAGACGTAGCTGCAATTAATTATCTTGGCTGCACGCATTAATAAATCGTGGCCACGCATTATTTATTAGAGGTGTAACGATTCGATGATTTGAAGCGTTGCGTTGATTTTTACAAGGCAACAAACATAAATCGATTATTAtcaaaaaaggacagacaagtgatgtgtaaaaaataattcatattttgaaattgattaaattatttaatagacTCGCAACACTATTTAGCCGTAATTGAGTCACGTATCGATCAGAGGATAATTAATCGCGTCGTATCGTCAAATCAAATCCTTGCCTTATGAATCGTATCGTAACGTGCAGAAGCGTGAATTTTACACCCGTATTATTTTATCACCAGCGCGGTTCTGAACGCATCGTATCCGGGATCATTGCATTACGATAAGGATTGTGGAGATGCGTAATAATTTTAACGTATTTTTTATTTCCGGTGTATTTGTGCCTGTATATTAATCTCAGCTCCAGAACGCAGAATTCAGCACCGCAGTAACACGACTGAGTGAATATTGTTGGCTGTTTGTCAACTTCGTAAGTAAAAATGTCGTTAAACACGTTAATGTAGCGAATCATTTGAAGTGCGAATTTTACCACGTAGCTCATATCAGTCATAACGCGCCGCAAGTTTCAGTCACTCgtatttgtttttctgattttacgaggagaacaaatataaatgttttattgttattaatcctatgaataatgtttgtgtgtctttctaTACGTTTCTGCGTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23567 lncRNA downstream 12063 996059 ~ 1016796 (-) True G19748
TU23599 lncRNA downstream 68762 958768 ~ 960097 (-) True G19775
TU23600 lncRNA downstream 68762 958768 ~ 960097 (-) False G19775
TU23572 lncRNA downstream 114164 914487 ~ 914695 (-) True G19753
TU23198 lncRNA downstream 230708 767198 ~ 798151 (-) True G19485
TU23560 lncRNA upstream 101098 1138672 ~ 1148673 (-) True G19742
TU23729 lncRNA upstream 301497 1339071 ~ 1343865 (-) True G19895
TU23778 lncRNA upstream 424110 1461684 ~ 1461933 (-) True G19943
TU23990 lncRNA upstream 687639 1725213 ~ 1725710 (-) True G20140
TU24016 lncRNA upstream 787076 1824650 ~ 1863172 (-) True G20156
XM_026945516.2 mRNA downstream 147469 875845 ~ 881390 (-) True LOC113545880
XM_034312014.1 mRNA downstream 169470 856085 ~ 859389 (-) True LOC113545884
XM_026945517.2 mRNA downstream 178216 847168 ~ 850643 (-) False LOC113545881
XM_026945518.2 mRNA downstream 178216 847168 ~ 850643 (-) True LOC113545881
XM_026945511.2 mRNA downstream 197708 827574 ~ 831151 (-) True gpr84
XM_034313367.1 mRNA upstream 2647 1040221 ~ 1059082 (-) True bin2b
XM_034313371.1 mRNA upstream 26118 1063692 ~ 1072919 (-) True stk35l
XM_026945597.2 mRNA upstream 60707 1098281 ~ 1110797 (-) False ube3a
XM_026945596.2 mRNA upstream 60707 1098281 ~ 1110796 (-) True ube3a
XM_026945626.2 mRNA upstream 104680 1142254 ~ 1194624 (-) True atp10a
trnaq-uug_1 other downstream 67252 961536 ~ 961607 (-) True trnaq-uug_1
XR_004577153.1 other downstream 375841 652731 ~ 653018 (-) True LOC117595970
XR_004577109.1 other downstream 431050 596887 ~ 597809 (-) False LOC113545844
XR_004577108.1 other downstream 431051 596715 ~ 597808 (-) False LOC113545844
XR_004577134.1 other downstream 461339 546880 ~ 567520 (-) False LOC117595947
TU24006 other upstream 775185 1812759 ~ 1822562 (-) False slc9a7
trnaf-gaa_13 other upstream 1999710 3037284 ~ 3037356 (-) True trnaf-gaa_13
XR_004580246.1 other upstream 2680141 3717715 ~ 3736886 (-) False npepl1
XR_004579840.1 other upstream 2712444 3750018 ~ 3777988 (-) True rab22a
TU25557 other upstream 3219094 4256668 ~ 4257087 (-) True G21434

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_08774019_08777325.mRNA True 1594 mRNA 0.38 3 CI01000340 8773837 ~ 8778302 (+)