RNA id: TU24492


Basic Information

Item Value
RNA id TU24492
length 202
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G20567
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2550346 ~ 2550547 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaagtctgacaaGTGTGTGCCTTTTCTAAATGTAAAATCTAAGTTTGTAAGTGTGTTTATCCCCAATCCGCTGCTAGATGGCGCTGTCTGTTCGTGTCATCCAGCCAAAAGTGTAACGCAGCACCCCTGCCTCTGGATCTGTGTGGTTTTGGACGCGATGGCATCCTCGGTTGGTTAAATCGGCTCATTTTGGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24459 lncRNA downstream 94912 2455230 ~ 2455434 (-) True G20537
TU24355 lncRNA downstream 439406 2086062 ~ 2110940 (-) True G20436
TU24350 lncRNA downstream 542683 1924755 ~ 2007663 (-) True G20434
TU24357 lncRNA downstream 638074 1909716 ~ 1912272 (-) True G20437
TU24333 lncRNA downstream 646071 1902365 ~ 1904275 (-) True G20430
TU24568 lncRNA upstream 54160 2604707 ~ 2633680 (-) False LOC113545802
TU24581 lncRNA upstream 110887 2661434 ~ 2661705 (-) True G20643
TU24582 lncRNA upstream 111765 2662312 ~ 2662630 (-) True G20644
TU24621 lncRNA upstream 195061 2745608 ~ 2747092 (-) True G20675
TU24760 lncRNA upstream 397631 2948178 ~ 2948401 (-) True G20801
XM_034299462.1 mRNA downstream 157580 2387942 ~ 2392766 (-) True lnp1
XM_026945595.2 mRNA downstream 166561 2366588 ~ 2383785 (-) True tmem45a
XM_034311228.1 mRNA downstream 189397 2353785 ~ 2360949 (-) True sft2d2a
XM_026945643.2 mRNA downstream 196836 2315145 ~ 2353510 (-) True chd1l
XM_034297767.1 mRNA downstream 288973 2144479 ~ 2261373 (-) False negr1
XM_026945416.2 mRNA upstream 54107 2604654 ~ 2610955 (-) True LOC113545802
XM_026945652.2 mRNA upstream 117275 2667822 ~ 2686894 (-) True LOC113545966
XM_026945653.2 mRNA upstream 117275 2667822 ~ 2685889 (-) False LOC113545966
XM_034311190.1 mRNA upstream 137483 2688030 ~ 2700352 (-) True LOC113545965
XM_034311186.1 mRNA upstream 151833 2702380 ~ 2715667 (-) True LOC113545857
TU24006 other downstream 727784 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 1512772 1028859 ~ 1037574 (-) False slc48a1b
trnaq-uug_1 other downstream 1588739 961536 ~ 961607 (-) True trnaq-uug_1
XR_004577153.1 other downstream 1897328 652731 ~ 653018 (-) True LOC117595970
XR_004577109.1 other downstream 1952537 596887 ~ 597809 (-) False LOC113545844
trnaf-gaa_13 other upstream 486737 3037284 ~ 3037356 (-) True trnaf-gaa_13
XR_004580246.1 other upstream 1167168 3717715 ~ 3736886 (-) False npepl1
XR_004579840.1 other upstream 1199471 3750018 ~ 3777988 (-) True rab22a
TU25557 other upstream 1706121 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 1781552 4332099 ~ 4332171 (-) True trnaf-gaa_14

Expression Profile