Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU25165 |
| length | 343 |
| lncRNA type | sense_over |
| GC content | 0.43 |
| exon number | 2 |
| gene id | LOC117599945 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 3579748 ~ 3587643 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579770.1 | lncRNA | upstream | 197152 | 3379891 ~ 3382596 (+) | True | LOC117599318 |
| TU24847 | lncRNA | upstream | 226063 | 3331762 ~ 3353685 (+) | True | G20868 |
| XR_004577417.1 | lncRNA | upstream | 361037 | 3215614 ~ 3218711 (+) | False | LOC113545973 |
| XR_004577414.1 | lncRNA | upstream | 361037 | 3215645 ~ 3218711 (+) | True | LOC113545973 |
| XR_004577419.1 | lncRNA | upstream | 361037 | 3215645 ~ 3218711 (+) | False | LOC113545973 |
| TU25200 | lncRNA | downstream | 69148 | 3649331 ~ 3651978 (+) | True | G21136 |
| TU25202 | lncRNA | downstream | 73568 | 3653751 ~ 3653967 (+) | True | G21138 |
| TU25237 | lncRNA | downstream | 86562 | 3666745 ~ 3666972 (+) | True | G21168 |
| TU25247 | lncRNA | downstream | 101798 | 3681981 ~ 3682254 (+) | True | G21178 |
| TU25269 | lncRNA | downstream | 133124 | 3713307 ~ 3714991 (+) | True | G21197 |
| XM_034314580.1 | mRNA | upstream | 1440 | 3550225 ~ 3578308 (+) | False | LOC117599944 |
| XM_034314579.1 | mRNA | upstream | 1440 | 3564210 ~ 3578308 (+) | True | LOC117599944 |
| XM_026945492.2 | mRNA | upstream | 35213 | 3540809 ~ 3544535 (+) | True | LOC113545865 |
| XM_034298857.1 | mRNA | upstream | 64665 | 3448150 ~ 3515083 (+) | True | sema5bb |
| XM_034312303.1 | mRNA | upstream | 188179 | 3377514 ~ 3391569 (+) | True | dync1i2b |
| XM_034312081.1 | mRNA | downstream | 8884 | 3589067 ~ 3613541 (+) | True | LOC113545866 |
| XM_034312086.1 | mRNA | downstream | 53913 | 3634096 ~ 3649254 (+) | True | fam210b |
| XM_026945579.2 | mRNA | downstream | 87093 | 3667276 ~ 3681466 (+) | True | aamp |
| XM_026945525.2 | mRNA | downstream | 106438 | 3686621 ~ 3704908 (+) | True | nelfcd |
| XM_034314427.1 | mRNA | downstream | 156717 | 3736900 ~ 3742306 (+) | False | LOC113545962 |
| XR_004580290.1 | other | upstream | 1440 | 3564210 ~ 3578308 (+) | False | LOC117599944 |
| XR_004579769.1 | other | upstream | 212461 | 3340446 ~ 3367287 (+) | False | gorasp2 |
| XR_004577413.1 | other | upstream | 392748 | 3182307 ~ 3187000 (+) | True | LOC113545950 |
| trnaf-gaa_12 | other | upstream | 589267 | 2990409 ~ 2990481 (+) | True | trnaf-gaa_12 |
| trnaf-gaa_11 | other | upstream | 590873 | 2988803 ~ 2988875 (+) | True | trnaf-gaa_11 |
| XR_004580256.1 | other | downstream | 157825 | 3738008 ~ 3741690 (+) | False | LOC113545962 |
| XR_004580255.1 | other | downstream | 158070 | 3738253 ~ 3741690 (+) | True | LOC113545962 |
| trnah-gug_1 | other | downstream | 771494 | 4351677 ~ 4351748 (+) | True | trnah-gug_1 |
| XR_003404681.1 | other | downstream | 1079826 | 4660009 ~ 4660123 (+) | True | LOC113545978 |
| XR_004579614.1 | other | downstream | 1174083 | 4754266 ~ 4759645 (+) | True | spega |
