RNA id: XM_034314590.1


Basic Information

Item Value
RNA id XM_034314590.1
length 1521
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC117599945
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3579748 ~ 3587643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATAGCTCTTTCCGACACAGCTAGAAGGGGAAGTGGGTGCAGCATCACTCTCTGGTTAAGACACAGATGAAGACACAGCACATTCACAGAGCGGGACAGAGacagtaacagtgtgtaacagaaCAGGAgctttaatatctttttatctttttgaaGTGGAGTTGGTGTGGAGATCTGTGAGTGTGAACTCAGGATGAAGATCCTCTTCATCTTCACCCTCTGTCTGATCTCAGATGGAGGAGCCTCCAAGGAAGTAACAGGATATTCAGGAGGAGGAGTCCTTATCAAGTGCAAGTATGGTGCAGAattcacacaaaataaaaaatatttctgtaaggGTTCAAGGCCAGGCTGTTCTGACCAAATAAAGACAGAAGCTAAAAATGAGTGGATAAATTCAGGAAAATTCTCATTGTTTGATGACACCAAatcagcagtgttcagtgtgatgatcagagagCTCACTGTACAGGACACTGGGACATACCAGTGTGGAATTGATATAAATTTGTGGAGCGACATTTACACACCGGTGGAACTGAAGGTAAAGGAAGATCTGTCCTATGAGAAGTCCATCAGTGAGACTGTCCATGTAGGAGGAGATTTGAACTTCAGCTGTAAATACCCAGTATCCCTCAGGAATGACTCCAAGTTTCTCTGCAAGAGGCTGCAACTTGCTGATTGTTCTCATAAAGCATCTGTTAATGAAAGTAGGaaagatgtaaatatgaggaagTTCTCCCTGTATGATGACAGAGCAGAACAAATCTTCAATGTgagtattaaaaatgtaactaaGCAGGACTCTGGGGAATACTGGTGTGGAGCTGAAGCAGCCTGGAAATCTGATCATGGATACAAGATGTATTTCACACAGATCCACCTCACAGTTACTGAGCCACGTGTCTCAGGTTCAACCTCAAAACCAACACAAccttcatcattatcatcatcatcatcatcatcatcatcatcattgtcatcatcattgTCACCATcgttgtcatcatcatcatcatcatcaccatcaccatcgttggcatcatcatcatcatcatcatctgaccTTATACAAGCTTCTCCTCCTGCAGGATTACCAGCTTCCACTATGATCACTGTGTCTGtaattctgctgctgctgtttctgaTTGGAATCGTATTCCTCACTTTGACTCTACAAAAGAGACATAAGATGCAAggtacccacacacacagaaaacacatgaTAAAATGTTTAGGTGGGAGGATGTATTTGATGCAATCTGTTTGATGCAGTCTGAAgaagttaatgaagatgaatgcctgaataaaaaaaatgattcatgaTCGATTCTCCACAAGTCTGTttagctgatttttttctctaaagAAATATTTACTGCAGTACTTGCTATTTGCCAGATTTAAATTTGccagttttaaatattatagtgcagtctctctctctctctctctctctgtgatatcacaaccaaaaaaattcaagtggaaaacaaaagaaacaaaagtgaGCACAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579770.1 lncRNA upstream 197158 3379891 ~ 3382596 (+) True LOC117599318
TU24847 lncRNA upstream 226069 3331762 ~ 3353685 (+) True G20868
XR_004577417.1 lncRNA upstream 361043 3215614 ~ 3218711 (+) False LOC113545973
TU25200 lncRNA downstream 61688 3649331 ~ 3651978 (+) True G21136
TU25202 lncRNA downstream 66108 3653751 ~ 3653967 (+) True G21138
TU25237 lncRNA downstream 79102 3666745 ~ 3666972 (+) True G21168
TU25247 lncRNA downstream 94338 3681981 ~ 3682254 (+) True G21178
TU25269 lncRNA downstream 125664 3713307 ~ 3714991 (+) True G21197
XM_034314580.1 mRNA upstream 1446 3550225 ~ 3578308 (+) False LOC117599944
XM_034314579.1 mRNA upstream 1446 3564210 ~ 3578308 (+) True LOC117599944
XM_026945492.2 mRNA upstream 35219 3540809 ~ 3544535 (+) True LOC113545865
XM_034298857.1 mRNA upstream 64671 3448150 ~ 3515083 (+) True sema5bb
XM_034312315.1 mRNA upstream 188185 3377515 ~ 3391569 (+) False dync1i2b
XM_034312081.1 mRNA downstream 1424 3589067 ~ 3613541 (+) True LOC113545866
XM_034312086.1 mRNA downstream 46453 3634096 ~ 3649254 (+) True fam210b
XM_026945579.2 mRNA downstream 79633 3667276 ~ 3681466 (+) True aamp
XM_026945525.2 mRNA downstream 98978 3686621 ~ 3704908 (+) True nelfcd
XM_034314427.1 mRNA downstream 149257 3736900 ~ 3742306 (+) False LOC113545962
XR_004580290.1 other upstream 1446 3564210 ~ 3578308 (+) False LOC117599944
XR_004579769.1 other upstream 212467 3340446 ~ 3367287 (+) False gorasp2
XR_004577413.1 other upstream 392754 3182307 ~ 3187000 (+) True LOC113545950
trnaf-gaa_12 other upstream 589273 2990409 ~ 2990481 (+) True trnaf-gaa_12
trnaf-gaa_11 other upstream 590879 2988803 ~ 2988875 (+) True trnaf-gaa_11
XR_004580256.1 other downstream 150365 3738008 ~ 3741690 (+) False LOC113545962
XR_004580255.1 other downstream 150610 3738253 ~ 3741690 (+) True LOC113545962
trnah-gug_1 other downstream 764034 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003404681.1 other downstream 1072366 4660009 ~ 4660123 (+) True LOC113545978
XR_004579614.1 other downstream 1166623 4754266 ~ 4759645 (+) True spega

Expression Profile